chrom_intergenic ID locus__tag TSS adjTSS_intergenic min10seq min10score score prediction class strand_intergenic promoterSeq start_intergenic end_intergenic chrom locus_tag_intergenic type startIntergenic endIntergenic strand stream seq aug_seq locus_tag CDS_0001 p_0002 p_0002 530 355 ATGTTCTAA 2 0.27 poor intergenic + GGCCGCGGCAAAATCCGCCCCCGCAGCGCGCAGGCCCCTTCCCCGACCGGCCCCGATGTTCTAAGGGAAGC 286 357 RC_nif_cluster_2_-_CP001312.1 CDS_0001 intergenic 507 885 - up ATCCCGGGGCAGACGCAACCGGCAAGCGAAATCAGACATTCGCGCAACGCATAGCTGCCATGCTGCACTCGCAGCATGATTCTCCTTGAACCGTTCTTATTCTGCCCATAAATCGGGCTTCGAAGGCGATGAGTTGCGGAAACGCGCATCACCTTCTACCTCCCTGTTGGACTAAGGCCGAGCTTGTCTCGGCCCTTTTTTTATCTTCGGGTAAAAGCGGCGTTTTCCGACCGCTCCGCGTCGTTTTGCACCGCTCTCGCGCTCTGGCTGTATCGCCTTGCGACGGCCGCGGCAAAATCCGCCCCCGCAGCGCGCAGGCCCCTTCCCCGACCGGCCCCGATGTTCTAAGGGAAGCCAAAGCCGATGCCGGAGGAGCCG AGACCGGCGACGCCGCCGTCGACTGATCCCGGGGCAGACGCAACCGGCAAGCGAAATCAGACATTCGCGCAACGCATAGCTGCCATGCTGCACTCGCAGCATGATTCTCCTTGAACCGTTCTTATTCTGCCCATAAATCGGGCTTCGAAGGCGATGAGTTGCGGAAACGCGCATCACCTTCTACCTCCCTGTTGGACTAAGGCCGAGCTTGTCTCGGCCCTTTTTTTATCTTCGGGTAAAAGCGGCGTTTTCCGACCGCTCCGCGTCGTTTTGCACCGCTCTCGCGCTCTGGCTGTATCGCCTTGCGACGGCCGCGGCAAAATCCGCCCCCGCAGCGCGCAGGCCCCTTCCCCGACCGGCCCCGATGTTCTAAGGGAAGCCAAAGCCGATGCCGGAGGAGCCGATGACCGAGCCGCAGATCACCCCCG p_0002 CDS_0001 p_0001 p_0001 765 120 CCCATAAAT 2 0.86 poor intergenic + CATAGCTGCCATGCTGCACTCGCAGCATGATTCTCCTTGAACCGTTCTTATTCTGCCCATAAATCGGGCTT 52 123 RC_nif_cluster_2_-_CP001312.1 CDS_0001 intergenic 507 885 - up ATCCCGGGGCAGACGCAACCGGCAAGCGAAATCAGACATTCGCGCAACGCATAGCTGCCATGCTGCACTCGCAGCATGATTCTCCTTGAACCGTTCTTATTCTGCCCATAAATCGGGCTTCGAAGGCGATGAGTTGCGGAAACGCGCATCACCTTCTACCTCCCTGTTGGACTAAGGCCGAGCTTGTCTCGGCCCTTTTTTTATCTTCGGGTAAAAGCGGCGTTTTCCGACCGCTCCGCGTCGTTTTGCACCGCTCTCGCGCTCTGGCTGTATCGCCTTGCGACGGCCGCGGCAAAATCCGCCCCCGCAGCGCGCAGGCCCCTTCCCCGACCGGCCCCGATGTTCTAAGGGAAGCCAAAGCCGATGCCGGAGGAGCCG AGACCGGCGACGCCGCCGTCGACTGATCCCGGGGCAGACGCAACCGGCAAGCGAAATCAGACATTCGCGCAACGCATAGCTGCCATGCTGCACTCGCAGCATGATTCTCCTTGAACCGTTCTTATTCTGCCCATAAATCGGGCTTCGAAGGCGATGAGTTGCGGAAACGCGCATCACCTTCTACCTCCCTGTTGGACTAAGGCCGAGCTTGTCTCGGCCCTTTTTTTATCTTCGGGTAAAAGCGGCGTTTTCCGACCGCTCCGCGTCGTTTTGCACCGCTCTCGCGCTCTGGCTGTATCGCCTTGCGACGGCCGCGGCAAAATCCGCCCCCGCAGCGCGCAGGCCCCTTCCCCGACCGGCCCCGATGTTCTAAGGGAAGCCAAAGCCGATGCCGGAGGAGCCGATGACCGAGCCGCAGATCACCCCCG p_0001 CDS_0002 p_0004 p_0004 1855 185 AAGCCATTT 1 0.32 poor intergenic + TGCACAAAAGTCGCTGCGACAACAAAGTTTACGCGCTAACAGCGAATTTGACCGAAAGCCATTTGTGAAGA 117 188 RC_nif_cluster_2_-_CP001312.1 CDS_0002 intergenic 1793 2040 - up TGCCTGCCTCTCCACCCTTTGCGCCTGAACCGCGCTTTCCATGGTTCTAAGCCTCTCGGGCGCGGAAATAAACGCCTATTGCGCGAGTGGGCCGGGCCGCCGCCTCTGCGTGGATGCACAAAAGTCGCTGCGACAACAAAGTTTACGCGCTAACAGCGAATTTGACCGAAAGCCATTTGTGAAGAGACCGCGTTTTAGGTATGCAGCCGATGCAGAACAGGTATGAACAGGTGACGTCGTGAACGGC CCACTGTCGAAAACACCAACTGCCATGCCTGCCTCTCCACCCTTTGCGCCTGAACCGCGCTTTCCATGGTTCTAAGCCTCTCGGGCGCGGAAATAAACGCCTATTGCGCGAGTGGGCCGGGCCGCCGCCTCTGCGTGGATGCACAAAAGTCGCTGCGACAACAAAGTTTACGCGCTAACAGCGAATTTGACCGAAAGCCATTTGTGAAGAGACCGCGTTTTAGGTATGCAGCCGATGCAGAACAGGTATGAACAGGTGACGTCGTGAACGGCATGGACTGGGACAAGTTGCGCATCT p_0004 CDS_0003 p_0003 p_0003 1910 117 GTAAACTTT 2 1.0 poor intergenic + TACCTAAAACGCGGTCTCTTCACAAATGGCTTTCGGTCAAATTCGCTGTTAGCGCGTAAACTTTGTTGTCG 46 117 RC_nif_cluster_2_-_CP001312.1 CDS_0003 intergenic 1793 2040 + up GCCGTTCACGACGTCACCTGTTCATACCTGTTCTGCATCGGCTGCATACCTAAAACGCGGTCTCTTCACAAATGGCTTTCGGTCAAATTCGCTGTTAGCGCGTAAACTTTGTTGTCGCAGCGACTTTTGTGCATCCACGCAGAGGCGGCGGCCCGGCCCACTCGCGCAATAGGCGTTTATTTCCGCGCCCGAGAGGCTTAGAACCATGGAAAGCGCGGTTCAGGCGCAAAGGGTGGAGAGGCAGGCA AGATGCGCAACTTGTCCCAGTCCATGCCGTTCACGACGTCACCTGTTCATACCTGTTCTGCATCGGCTGCATACCTAAAACGCGGTCTCTTCACAAATGGCTTTCGGTCAAATTCGCTGTTAGCGCGTAAACTTTGTTGTCGCAGCGACTTTTGTGCATCCACGCAGAGGCGGCGGCCCGGCCCACTCGCGCAATAGGCGTTTATTTCCGCGCCCGAGAGGCTTAGAACCATGGAAAGCGCGGTTCAGGCGCAAAGGGTGGAGAGGCAGGCATGGCAGTTGGTGTTTTCGACAGTGG p_0003 CDS_0011 p_0005 p_0005 10076 71 ACAAAATTC 2 1.0 poor intergenic + TTGTTAATTGAGCGGCCGATCAAAAACGACTTCTTGAACGGCAAAAGCGACAAAATTCTTGATGTTTTCCC 0 71 RC_nif_cluster_2_-_CP001312.1 CDS_0011 intergenic 10005 10140 + up TTGTTAATTGAGCGGCCGATCAAAAACGACTTCTTGAACGGCAAAAGCGACAAAATTCTTGATGTTTTCCCGGCGCTGCAACAGGGTGCAGGCGAAAGTGATTCGATCACAGAGGTTCGGGGGAAGGTCTCGCAA GCAGGTGGTGGAGGCCTGGGCGTGATTGTTAATTGAGCGGCCGATCAAAAACGACTTCTTGAACGGCAAAAGCGACAAAATTCTTGATGTTTTCCCGGCGCTGCAACAGGGTGCAGGCGAAAGTGATTCGATCACAGAGGTTCGGGGGAAGGTCTCGCAATGCATACGGAAGCGATTGCCCGCAG p_0005 CDS_0012 p_0007 p_0007 11633 215 TTTCGGAAC 1 0.99 poor intergenic + TTTCGGAACATTGCCCATGAATTGGGCGCCGCGCGAACGGATTTGCCGATTTCGGCGCGGATCATGAGTCG 144 215 RC_nif_cluster_2_-_CP001312.1 CDS_0012 intergenic 11561 11848 - up TGGCAGGGTCCGAAGGTGGATCGTTATATAGACCCGACTAATAGCGATGGTTTTTCCGGAAGGGCAGAGGCTTGTCGGACATGCGCGGCGGCGTTATCACCCGCGGCCTCATATCCCGTGCCAAGTGATGCGAAAACGGGCTGATTTCGGAACATTGCCCATGAATTGGGCGCCGCGCGAACGGATTTGCCGATTTCGGCGCGGATCATGAGTCGGCAAGACGCAAGCCGCAGTGGCCCCCGGGGCCGGTTTGCGCCACAATGGCGGCAACGAAACGGGAGGCGGCG GCGGCGATGAGGGGCTGTTCGTTCATGGCAGGGTCCGAAGGTGGATCGTTATATAGACCCGACTAATAGCGATGGTTTTTCCGGAAGGGCAGAGGCTTGTCGGACATGCGCGGCGGCGTTATCACCCGCGGCCTCATATCCCGTGCCAAGTGATGCGAAAACGGGCTGATTTCGGAACATTGCCCATGAATTGGGCGCCGCGCGAACGGATTTGCCGATTTCGGCGCGGATCATGAGTCGGCAAGACGCAAGCCGCAGTGGCCCCCGGGGCCGGTTTGCGCCACAATGGCGGCAACGAAACGGGAGGCGGCGATGACGGACGGTGTGCGCGGGGCGC p_0007 CDS_0013 p_0006 p_0006 11704 143 CGACTCATG 1 0.94 poor intergenic + CGACTCATGATCCGCGCCGAAATCGGCAAATCCGTTCGCGCGGCGCCCAATTCATGGGCAATGTTCCGAAA 72 143 RC_nif_cluster_2_-_CP001312.1 CDS_0013 intergenic 11561 11848 + up CGCCGCCTCCCGTTTCGTTGCCGCCATTGTGGCGCAAACCGGCCCCGGGGGCCACTGCGGCTTGCGTCTTGCCGACTCATGATCCGCGCCGAAATCGGCAAATCCGTTCGCGCGGCGCCCAATTCATGGGCAATGTTCCGAAATCAGCCCGTTTTCGCATCACTTGGCACGGGATATGAGGCCGCGGGTGATAACGCCGCCGCGCATGTCCGACAAGCCTCTGCCCTTCCGGAAAAACCATCGCTATTAGTCGGGTCTATATAACGATCCACCTTCGGACCCTGCCA GCGCCCCGCGCACACCGTCCGTCATCGCCGCCTCCCGTTTCGTTGCCGCCATTGTGGCGCAAACCGGCCCCGGGGGCCACTGCGGCTTGCGTCTTGCCGACTCATGATCCGCGCCGAAATCGGCAAATCCGTTCGCGCGGCGCCCAATTCATGGGCAATGTTCCGAAATCAGCCCGTTTTCGCATCACTTGGCACGGGATATGAGGCCGCGGGTGATAACGCCGCCGCGCATGTCCGACAAGCCTCTGCCCTTCCGGAAAAACCATCGCTATTAGTCGGGTCTATATAACGATCCACCTTCGGACCCTGCCATGAACGAACAGCCCCTCATCGCCGC p_0006 CDS_0018 p_0008 p_0008 17631 96 CCCGGCTTC 1 0.97 poor intergenic + CCCGGCTTCGGCCGGGGTTTTTGTTTGCGCGCCTGTCGCATTCCCGACAAAAGCGCAGGTTTTGTGCCAAT 25 96 RC_nif_cluster_2_-_CP001312.1 CDS_0018 intergenic 17558 17727 - up AGGGCGCTTGGAAGACGCGACGGACCCCGGCTTCGGCCGGGGTTTTTGTTTGCGCGCCTGTCGCATTCCCGACAAAAGCGCAGGTTTTGTGCCAATCGCCCCGCCGCGGGCCTGGCACGGTTCTTGCTGCATCCCTGATGACCCAAGCGGGACCAGAACGGAGAGCAGC TCGAGATCGAGCTGCGCAAGATCTGAGGGCGCTTGGAAGACGCGACGGACCCCGGCTTCGGCCGGGGTTTTTGTTTGCGCGCCTGTCGCATTCCCGACAAAAGCGCAGGTTTTGTGCCAATCGCCCCGCCGCGGGCCTGGCACGGTTCTTGCTGCATCCCTGATGACCCAAGCGGGACCAGAACGGAGAGCAGCATGTCGGACAATGTCGTGGCCCTTG p_0008 CDS_0019 p_0009 p_0009 19686 83 CTCAAAGTT 1 0.89 poor intergenic + GCGACCTCTGCCAGACCGGAAGCGCCATTTTTTTCGGCGCTCCGGCCATTCCCGCCTCAAAGTTGATCTTA 12 83 RC_nif_cluster_2_-_CP001312.1 CDS_0019 intergenic 19475 19769 - up AGTCTGCGAAACGCGACCTCTGCCAGACCGGAAGCGCCATTTTTTTCGGCGCTCCGGCCATTCCCGCCTCAAAGTTGATCTTAACGAAGCCTCAATCACCCCCAAGTTGCGACATATTGGCACCTGAGACTGTTTGCGCCGTGCATCCGGGCGCAAGCTTGACCAAGTCTCGACATGTCCGCCACGGCACCCAACCGCGATCGAACGATCCACGCAGCGCAGACTGCGGCACCCCATGGGAGGGGGTGATCGTCGTTTGATCCCCCGGCGCCGGGCAAGCGAGGGAGAACAGTG GTCGCCGCGCCGCCGCCGCGCGCTGAGTCTGCGAAACGCGACCTCTGCCAGACCGGAAGCGCCATTTTTTTCGGCGCTCCGGCCATTCCCGCCTCAAAGTTGATCTTAACGAAGCCTCAATCACCCCCAAGTTGCGACATATTGGCACCTGAGACTGTTTGCGCCGTGCATCCGGGCGCAAGCTTGACCAAGTCTCGACATGTCCGCCACGGCACCCAACCGCGATCGAACGATCCACGCAGCGCAGACTGCGGCACCCCATGGGAGGGGGTGATCGTCGTTTGATCCCCCGGCGCCGGGCAAGCGAGGGAGAACAGTGATGATCGACATCCGGGACCGGCTCG p_0009 CDS_0021 p_0010 p_0010 21662 189 GTCGCAAAT 1 0.81 poor intergenic + GTCGCAAATCCCCCAATGTGGGCCTGAAGCTTGCTTGCGGGGCCCGTTACGGTTGGCACGCTTCTTGCTGG 118 189 RC_nif_cluster_2_-_CP001312.1 CDS_0021 intergenic 21622 21851 - up AGCACGCTTTCTCTCGACCTGGGCCGGCAGTTTCGACTGCCGGCTTTTTTCGTTTCGGCCCGACGTTCGGCAAGGTCCACCGCCCCCGACCCGATTTTCCGCATTTACAACAATGTCTGTCGCAAATCCCCCAATGTGGGCCTGAAGCTTGCTTGCGGGGCCCGTTACGGTTGGCACGCTTCTTGCTGGATCATTTCTGAAGCCTCAACCGATCAAAAAGGGGGATGCG ACATCAGCTTCGATCTGACCCGCTGAGCACGCTTTCTCTCGACCTGGGCCGGCAGTTTCGACTGCCGGCTTTTTTCGTTTCGGCCCGACGTTCGGCAAGGTCCACCGCCCCCGACCCGATTTTCCGCATTTACAACAATGTCTGTCGCAAATCCCCCAATGTGGGCCTGAAGCTTGCTTGCGGGGCCCGTTACGGTTGGCACGCTTCTTGCTGGATCATTTCTGAAGCCTCAACCGATCAAAAAGGGGGATGCGATGAAGGATCTCTTCGACGAAAGCC p_0010 CDS_0024 p_0011 p_0011 26034 172 TCATTATTT 3 1.0 poor intergenic + CAATTTGTCGGCCTTGTTCCATTTCGAACAAAACCTTCAACACCATGATTTCGCGTCATTATTTGCGAAAA 100 171 RC_nif_cluster_2_-_CP001312.1 CDS_0024 intergenic 25941 26206 - up AAACCGCCGCAAGGACCGGAAAACCCCGCCGCGCTGGCGGGGTTTTTCATTTCCTCCCGACAGAGGGCCCGACAAAACCCCGCCCGACACCGCAGGCCCTACAATTTGTCGGCCTTGTTCCATTTCGAACAAAACCTTCAACACCATGATTTCGCGTCATTATTTGCGAAAATTCCGGTTGGCACGATGGCTGCTGTAGAAGCTGTGAGCCCGGTTAGGAACCGTCTCGATATTCGTGAAGCACCAACCCCCAAGGGAGCCACAC CCGGCACCCCCGGCGGCTCGGTCTGAAACCGCCGCAAGGACCGGAAAACCCCGCCGCGCTGGCGGGGTTTTTCATTTCCTCCCGACAGAGGGCCCGACAAAACCCCGCCCGACACCGCAGGCCCTACAATTTGTCGGCCTTGTTCCATTTCGAACAAAACCTTCAACACCATGATTTCGCGTCATTATTTGCGAAAATTCCGGTTGGCACGATGGCTGCTGTAGAAGCTGTGAGCCCGGTTAGGAACCGTCTCGATATTCGTGAAGCACCAACCCCCAAGGGAGCCACACATGGGCAAACTCCGTCAGATCGCCT p_0011 CDS_0026 p_0012 p_0012 26692 115 CGCAGCAAG 1 1.0 poor intergenic + CGCAGCAAGGGCCATGCCAGCGCCGCCGGGCGGGCTTGCCGGGGGGCGGGCGGGGGCCTAGCCTTGGCCCT 44 115 RC_nif_cluster_2_-_CP001312.1 CDS_0026 intergenic 26577 26717 + up CGCAGTCCTCTTTTCTGTCGTTGAGGGAAAGATCCCGAAAACCGCGCAGCAAGGGCCATGCCAGCGCCGCCGGGCGGGCTTGCCGGGGGGCGGGCGGGGGCCTAGCCTTGGCCCTGTTCCTCTCCTGCGCCAAGGTCCGA GCGACGTAAAGGTGATGTTCGGCATCGCAGTCCTCTTTTCTGTCGTTGAGGGAAAGATCCCGAAAACCGCGCAGCAAGGGCCATGCCAGCGCCGCCGGGCGGGCTTGCCGGGGGGCGGGCGGGGGCCTAGCCTTGGCCCTGTTCCTCTCCTGCGCCAAGGTCCGATGCCCCCGCCCCCGCCCGCCTCTTC p_0012 CDS_0031 p_0014 p_0014 32726 77 GCTTTTCCC 1 0.92 poor intergenic + GCTTTTCCCTATTTCATCACTAAAAACTATTCAGTTTTGTAAAGTCCCGCAAGGCCGCATAGTCCCCGCAA 6 77 RC_nif_cluster_2_-_CP001312.1 CDS_0031 intergenic 32693 32803 - up TGATAAGCTTTTCCCTATTTCATCACTAAAAACTATTCAGTTTTGTAAAGTCCCGCAAGGCCGCATAGTCCCCGCAAGCCCCGCCAAACGGGCCAACCAACGAGGGAACC TGCAACTGGCGAAGCGTGCAACGCATGATAAGCTTTTCCCTATTTCATCACTAAAAACTATTCAGTTTTGTAAAGTCCCGCAAGGCCGCATAGTCCCCGCAAGCCCCGCCAAACGGGCCAACCAACGAGGGAACCATGGCCGCCAAGACCTATGACGCCG p_0014 CDS_0032 p_0013 p_0013 32784 91 TAGTTTTTA 2 0.99 poor intergenic + CGTTTGGCGGGGCTTGCGGGGACTATGCGGCCTTGCGGGACTTTACAAAACTGAATAGTTTTTAGTGATGA 17 88 RC_nif_cluster_2_-_CP001312.1 CDS_0032 intergenic 32693 32803 + up GGTTCCCTCGTTGGTTGGCCCGTTTGGCGGGGCTTGCGGGGACTATGCGGCCTTGCGGGACTTTACAAAACTGAATAGTTTTTAGTGATGAAATAGGGAAAAGCTTATCA CGGCGTCATAGGTCTTGGCGGCCATGGTTCCCTCGTTGGTTGGCCCGTTTGGCGGGGCTTGCGGGGACTATGCGGCCTTGCGGGACTTTACAAAACTGAATAGTTTTTAGTGATGAAATAGGGAAAAGCTTATCATGCGTTGCACGCTTCGCCAGTTGCA p_0013 CDS_0035 p_0015 p_0015 35374 210 GAAATCAAT 2 0.88 poor intergenic + CCGCTCGAAGGCGCTTTGGGAATGGTCCGGCGCGGGGTTGCCTTTTGCCGAAATCAATCATATGATTGAGT 139 210 RC_nif_cluster_2_-_CP001312.1 CDS_0035 intergenic 35373 35584 - up TGACCGACTCCGTTATATAGTGATTCCATATAACGACAGGCTGCGCCGCACAAGGACACCGATCCAAGGGCGGCGCCCGCCTCTGTGCGCGGATGCAGGCAAGAACCCCGCGCCTGCCCGTTATTCGGGCAAGCCTGCCCCGCTCGAAGGCGCTTTGGGAATGGTCCGGCGCGGGGTTGCCTTTTGCCGAAATCAATCATATGATTGAGTC GCCTCGACCTGATCATCGCCGAACATGACCGACTCCGTTATATAGTGATTCCATATAACGACAGGCTGCGCCGCACAAGGACACCGATCCAAGGGCGGCGCCCGCCTCTGTGCGCGGATGCAGGCAAGAACCCCGCGCCTGCCCGTTATTCGGGCAAGCCTGCCCCGCTCGAAGGCGCTTTGGGAATGGTCCGGCGCGGGGTTGCCTTTTGCCGAAATCAATCATATGATTGAGTCATGACCGAACAGACCCCTCTCCAGC p_0015 CDS_0037 p_0016 p_0016 37308 108 GTTACATAA 2 0.99 poor intergenic + GGGGCTTTTTCTTTGCGGCAGCCCGTTCGGAATTCCGTTTACCGAACGGTAATCGGTTACATAACGGTAAG 39 110 RC_nif_cluster_2_-_CP001312.1 CDS_0037 intergenic 37200 37464 + up TCGACGGCCAATGACCGAATACCGGCCCCGCTTCGGCGGGGCTTTTTCTTTGCGGCAGCCCGTTCGGAATTCCGTTTACCGAACGGTAATCGGTTACATAACGGTAAGGAGTTCCTGTCGGGCGACGGGGCGATGATTTCCATTAATATCATATGGTTGAGCGGGCATTTCGCCCCGAAGCCGCCTTGGCACGGGGGCTGCTCTATAGGGTTCAGACGGATGCGAAACGCCGTCGCAAGACATCCCTTCCCAAGGAGCGACCCA GCACCGGTATCGCGCTTCGGCCTGATCGACGGCCAATGACCGAATACCGGCCCCGCTTCGGCGGGGCTTTTTCTTTGCGGCAGCCCGTTCGGAATTCCGTTTACCGAACGGTAATCGGTTACATAACGGTAAGGAGTTCCTGTCGGGCGACGGGGCGATGATTTCCATTAATATCATATGGTTGAGCGGGCATTTCGCCCCGAAGCCGCCTTGGCACGGGGGCTGCTCTATAGGGTTCAGACGGATGCGAAACGCCGTCGCAAGACATCCCTTCCCAAGGAGCGACCCATGACCCGCAAGATCGCCATTTACGG p_0016