T00007 ProPr promoter 1920 1991 0.99 - . ID=p_0002;locus_tag=p_0002;TSS=1920;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=CCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAT T00007 ProPr promoter 1804 1875 0.99 - . ID=p_0003;locus_tag=p_0003;TSS=1804;Downstream_locus_tag=p_0003;class=intergenic;promoterSeq=AAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGT T00007 ProPr promoter 1782 1853 1.0 + . ID=p_0001;locus_tag=p_0001;TSS=1853;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=AAGCATTCTGTAACAAAGCGGGACCAAAGCCATGACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCA T00007 ProPr promoter 5297 5368 0.93 + . ID=p_0004;locus_tag=p_0004;TSS=5368;Downstream_locus_tag=p_0004;class=intergenic;promoterSeq=AGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATT ##gff-version 3 # Sequence Data: seqnum=1;seqlen=5701;seqhdr="T00007 , complement(66348 .. 72048)" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="20|Escherichia_coli_UMN026|B|50.7|11|1";gc_cont=50.70;transl_table=11;uses_sd=1 T00007 Prodigal_v2.6.3 CDS 3 698 89.5 - 0 ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543;conf=100.00;score=89.52;cscore=83.64;sscore=5.88;rscore=2.79;uscore=-0.87;tscore=3.95; T00007 Prodigal_v2.6.3 CDS 784 1662 90.6 - 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526;conf=100.00;score=89.98;cscore=75.02;sscore=14.96;rscore=11.19;uscore=0.47;tscore=3.95; T00007 Prodigal_v2.6.3 CDS 2001 3701 216.8 + 0 ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580;conf=99.99;score=216.84;cscore=200.86;sscore=15.99;rscore=11.19;uscore=0.85;tscore=3.95; T00007 Prodigal_v2.6.3 CDS 3712 5214 237.2 + 0 ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555;conf=99.99;score=238.33;cscore=225.04;sscore=13.29;rscore=10.71;uscore=-2.54;tscore=3.95; T00007 Prodigal_v2.6.3 CDS 5499 5699 44.2 + 0 ID=1_5;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542;conf=100.00;score=43.51;cscore=29.84;sscore=13.68;rscore=14.84;uscore=-4.46;tscore=3.95; chrom db type start end name strand score description CDS_0002 ProPr promoter 10.0 81.0 prom_0002 + 0.99 ID=p_0002;locus_tag=p_0002;TSS=81.0;class=intergenic;min10seq=CCATCCAAA;min10score=1;min10class=weak;promseq=CCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAT CDS_0005 ProPr promoter 83.0 154.0 prom_0004 + 0.93 ID=p_0004;locus_tag=p_0004;TSS=154.0;class=intergenic;min10seq=AGCAAAGCG;min10score=1;min10class=weak;promseq=AGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATT CDS_0003 ProPr promoter 119.0 190.0 prom_0001 + 1.0 ID=p_0001;locus_tag=p_0001;TSS=190.0;class=intergenic;min10seq=GTCTATAAT;min10score=4;min10class=weak;promseq=AAGCATTCTGTAACAAAGCGGGACCAAAGCCATGACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCA CDS_0002 ProPr promoter 126.0 197.0 prom_0003 + 0.99 ID=p_0003;locus_tag=p_0003;TSS=197.0;class=intergenic;min10seq=AAATAATCA;min10score=1;min10class=weak;promseq=AAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGT T00007 ProPr promoter 1920 1991 0.99 - . ID=p_0002;locus_tag=p_0002;TSS=1920;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=CCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAT T00007 ProPr promoter 1804 1875 0.99 - . ID=p_0003;locus_tag=p_0003;TSS=1804;Downstream_locus_tag=p_0003;class=intergenic;promoterSeq=AAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGT T00007 ProPr promoter 1782 1853 1.0 + . ID=p_0001;locus_tag=p_0001;TSS=1853;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=AAGCATTCTGTAACAAAGCGGGACCAAAGCCATGACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCA T00007 ProPr promoter 5297 5368 0.93 + . ID=p_0004;locus_tag=p_0004;TSS=5368;Downstream_locus_tag=p_0004;class=intergenic;promoterSeq=AGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATT T00007 ProPr gene 3 698 CDS_0001 - 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=GGA/GAG/AGG;conf=100.00;prodigalID=1_1; T00007 ProPr gene 784 1662 CDS_0002 - 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_2; T00007 ProPr gene 2001 3701 CDS_0003 + 99.99 ID=CDS_0003;locus_tag=CDS_0003;RBS=GGAG/GAGG;conf=99.99;prodigalID=1_3; T00007 ProPr gene 3712 5214 CDS_0004 + 99.99 ID=CDS_0004;locus_tag=CDS_0004;RBS=AGGA;conf=99.99;prodigalID=1_4; T00007 ProPr gene 5499 5699 CDS_0005 + 100.00 ID=CDS_0005;locus_tag=CDS_0005;RBS=AGGAG;conf=100.00;prodigalID=1_5; T00007 ProPr promoter 1920 1991 0.99 - . ID=p_0002;locus_tag=p_0002;TSS=1920;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=CCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAT T00007 ProPr promoter 1804 1875 0.99 - . ID=p_0003;locus_tag=p_0003;TSS=1804;Downstream_locus_tag=p_0003;class=intergenic;promoterSeq=AAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGT T00007 ProPr promoter 1782 1853 1.0 + . ID=p_0001;locus_tag=p_0001;TSS=1853;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=AAGCATTCTGTAACAAAGCGGGACCAAAGCCATGACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCA T00007 ProPr promoter 5297 5368 0.93 + . ID=p_0004;locus_tag=p_0004;TSS=5368;Downstream_locus_tag=p_0004;class=intergenic;promoterSeq=AGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATT T00007 ProPr gene 3 698 CDS_0001 - 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=GGA/GAG/AGG;conf=100.00;prodigalID=1_1; T00007 ProPr gene 784 1662 CDS_0002 - 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_2; T00007 ProPr gene 2001 3701 CDS_0003 + 99.99 ID=CDS_0003;locus_tag=CDS_0003;RBS=GGAG/GAGG;conf=99.99;prodigalID=1_3; T00007 ProPr gene 3712 5214 CDS_0004 + 99.99 ID=CDS_0004;locus_tag=CDS_0004;RBS=AGGA;conf=99.99;prodigalID=1_4; T00007 ProPr gene 5499 5699 CDS_0005 + 100.00 ID=CDS_0005;locus_tag=CDS_0005;RBS=AGGAG;conf=100.00;prodigalID=1_5;