chrom ID TSS locus_tag min10seq min10score strand score class promoterSeq locus_tag_intergenic startIntergenic endIntergenic PHFA01000043.1_7703_20121__12785_13546 p_0014 420 p_0014 GTCGAATCT 1 - 0.99 intergenic GTCGAATCTTTTCGTTTTCTTATCGAGCGGCCTGTGACACTTAACGCCCCCTGAATCCCGATACTCCTAGA PHFA01000043.1_7703_20121__12785_13546_F5 396 564 QEUZ01000023.1_2571_10967__2571_3305 p_0018 873 p_0018 CCCCGCGCC 1 + 0.84 intergenic CCCCGCGCCATCGCCAAACTCCCATCCAAACTGCGTTGCAACAGGCGGCAACATGGTCGCGCCAACCAGCA QEUZ01000023.1_2571_10967__2571_3305_R1 735 887 WSXY01000001.1_237449_244867__241035_241793 p_0055 937 p_0055 GCCTCGGCG 1 - 0.23 intergenic GCCTCGGCGGACAAACACCGTGTACCTGAAGTCATACGCGGGGGCAGGGCGCAAGCGGTAGACTGGCCCCA WSXY01000001.1_237449_244867__241035_241793_F5 906 1099 WSXY01000001.1_237449_244867__241035_241793 p_0054 1028 p_0054 CGCCCTGCC 1 + 0.63 intergenic CGCCCTGCCCCCGCGTATGACTTCAGGTACACGGTGTTTGTCCGCCGAGGCGCACGGGTAGCATGGTGTCG WSXY01000001.1_237449_244867__241035_241793_F4 906 1099 RGEL01000035.1_1017_11717__5821_6576 p_0035 2011 p_0035 ATCGGACAC 1 + 0.53 intergenic ATCGGACACGAGGTTGTCATCCATGGCTTCAGGTTAGTCACGTCCCCGGAAACGGGCTTAGGGTGACGGAG RGEL01000035.1_1017_11717__5821_6576_F3 1937 2026 WSXY01000001.1_237449_244867__241035_241793 p_0056 2326 p_0056 TTTTCGCAA 1 + 1.0 intergenic TTTTCGCAATCATCGGGAACGAGGAAGAATCAGCTACTTCGTGCCGGTGCATCCAGGTCACTCTTGCCGAC WSXY01000001.1_237449_244867__241035_241793_F2 2251 2778 PCAM01000002.1_158490_173999__163399_164184 p_0008 2357 p_0008 ACCATATTT 2 - 1.0 intergenic TCGAATGCAACACCAATTGCATCGTGACACCCGAATTCTCTTGCTCTCCTGTGGCACCATATTTACCTGAA PCAM01000002.1_158490_173999__163399_164184_F4 2311 2504 WSXY01000001.1_237449_244867__241035_241793 p_0061 2363 p_0061 ATGTGAACG 1 - 0.99 intergenic ATGTGAACGGCAAAAGCTATCTTCGGACGAGCGGGTGGGTCTTGTCGAAGATACTGCCTACACTGGAAGAG WSXY01000001.1_237449_244867__241035_241793_F3 2251 2778 PCAM01000002.1_158490_173999__163399_164184 p_0007 2421 p_0007 GATGCAATT 1 + 1.0 intergenic GCAATAGTTCAGGTAAATATGGTGCCACAGGAGAGCAAGAGAATTCGGGTGTCACGATGCAATTGGTGTTG PCAM01000002.1_158490_173999__163399_164184_F3 2311 2504 WSXY01000001.1_237449_244867__241035_241793 p_0060 2501 p_0060 TGGCCGGTT 1 - 1.0 intergenic TGGCCGGTTCAGAATCGAGCGCATGGAGGGCGAAGCCGCTCATGAAGAACAGCGAGTACGTCATCGAGCAG WSXY01000001.1_237449_244867__241035_241793_F3 2251 2778 WSXY01000001.1_237449_244867__241035_241793 p_0057 2567 p_0057 CGATACTGC 1 + 0.99 intergenic CGATACTGCTCGATGACGTACTCGCTGTTCTTCATGAGCGGCTTCGCCCTCCATGCGCTCGATTCTGAACC WSXY01000001.1_237449_244867__241035_241793_F2 2251 2778 WSXY01000001.1_237449_244867__241035_241793 p_0059 2609 p_0059 GGTTCCATC 1 - 1.0 intergenic GGTTCCATCAACACAGGACGAAGAGAGCGAGGTTACAACCGGCCAATATGCTCGAGGTACACTGATCTTGA WSXY01000001.1_237449_244867__241035_241793_F3 2251 2778 RCMX01000002.1_384775_394054__390583_391359 p_0025 2662 p_0025 TGGTAATGA 2 + 0.29 intergenic GGGAACTCCGCCGCGGTCCCACGATTGGCACGCCCTCTGCTAATCCCTACCAATATGGTAATGATTTTCGT RCMX01000002.1_384775_394054__390583_391359_F3 2295 2690 PHFA01000043.1_7703_20121__12785_13546 p_0016 2668 p_0016 TGCTAGATT 2 - 1.0 intergenic CCACCTCCTTTCGCTTAGGTCAATGTTCCCAAATCCACCGCAACGCCCCGCCTGATGCTAGATTTGTCTCA PHFA01000043.1_7703_20121__12785_13546_F4 2642 2917 WSXY01000001.1_237449_244867__241035_241793 p_0058 2741 p_0058 TGATACTAT 2 + 0.87 intergenic TGATGGAACCCGCAATCTGCCGTCGCCAGGCAGGGCTTGCGTCGCGTCTACTCTGTGATACTATGTACCAG WSXY01000001.1_237449_244867__241035_241793_F2 2251 2778 PHFA01000043.1_7703_20121__12785_13546 p_0015 2753 p_0015 CATCAGGCG 1 + 1.0 intergenic CATCAGGCGGGGCGTTGCGGTGGATTTGGGAACATTGACCTAAGCGAAAGGAGGTGGTCGACAATGGCCAC PHFA01000043.1_7703_20121__12785_13546_F3 2642 2917 QEUZ01000023.1_2571_10967__2571_3305 p_0019 3239 p_0019 GGAATTATT 2 + 1.0 intergenic GCCTCCCTTGACATGGGTATACCGGGTGACTAGGATAATCCCGATAATTTCAGTCGGAATTATTGCATTCA QEUZ01000023.1_2571_10967__2571_3305_R2 2905 3307 RGSD01000015.1_1_13590__5003_5740 p_0045 3409 p_0045 CATTCCCCG 1 - 1.0 intergenic CATTCCCCGCCACTTCTTCTTTTTGTGGACGGGATCATCCTTTCCCCGCCTCGTCGATCACGTCCATCGAG RGSD01000015.1_1_13590__5003_5740_F2 3403 3702 RGSD01000015.1_1_13590__5003_5740 p_0042 3489 p_0042 GGGAATGAT 1 + 0.98 intergenic CGTGATCGACGAGGCGGGGAAAGGATGATCCCGTCCACAAAAAGAAGAAGTGGCGGGGAATGATGGGTGAA RGSD01000015.1_1_13590__5003_5740_F1 3403 3702 RGSD01000015.1_1_13590__5003_5740 p_0043 3604 p_0043 TGAACGATT 2 + 1.0 intergenic ACAACCGCAGGTTTCGCCAGGAATGCCAAAAAACAACCGTCGATCGACAAGTTGGTGAACGATTCGAATCG RGSD01000015.1_1_13590__5003_5740_F1 3403 3702 RGSD01000015.1_1_13590__5003_5740 p_0044 3630 p_0044 GTTGTGAAA 1 - 1.0 intergenic GTTGTGAAAACTATTGACTCGGTTCGTTTGGTCGTAGTTGTGCCGGTTAACGATGCGCGTACGTTTGGAGA RGSD01000015.1_1_13590__5003_5740_F2 3403 3702 PBTV01000036.1_32280_41450__35997_36788 p_0004 3630 p_0004 TGGCACAAT 1 - 0.92 intergenic CCTCGGCCGTCAAAGGCTGTAGGCGCGCATCCAAGATGCTCGCGTGGCGAATTCTTGGCACAATAGGAAAC PBTV01000036.1_32280_41450__35997_36788_F1 3630 3718 RCMX01000002.1_384775_394054__390583_391359 p_0026 3725 p_0026 GGAACGGGA 1 + 1.0 intergenic GGAACGGGACGGCCATCTGGCCGTCCCGTTTCGCGTTCGCACACAGCGGTATCGGCCGCATGATCGTCGTC RCMX01000002.1_384775_394054__390583_391359_F2 3565 3819 RGRJ01000028.1_6375_14007__10971_11762 p_0040 4497 p_0040 TGATTGAAT 2 - 1.0 intergenic GTACCGCAGCCGGTACATCGAGCTGAAAAATTCACACGACCACGCCGTCATTCAGTGATTGAATGACGAAG RGRJ01000028.1_6375_14007__10971_11762_F1 4444 4597 PBWE01000029.1_3961_13080__7612_8403 p_0006 4542 p_0006 TGATTGAAT 2 + 0.75 intergenic GTACCGCAGCCGGTACCTCGGGCTGAAATATTCACACAACCGCGTCGTCATTCAGTGATTGAATGACGAGG PBWE01000029.1_3961_13080__7612_8403_R1 4443 4542 PBTV01000036.1_32280_41450__35997_36788 p_0005 4608 p_0005 TGATTGAAT 2 + 1.0 intergenic GAGCCATGACCGGCCCTTCGGACTGAAAGATTCACGCAAACCCGCCGTCATTCAGTGATTGAATGAAGAGG PBTV01000036.1_32280_41450__35997_36788_R1 4509 4608 PCAM01000002.1_158490_173999__163399_164184 p_0009 4808 p_0009 GACAATATT 3 - 0.99 intergenic GGGCAGATGGAACGCGCCACGATGCGTTTTAACTGAAGACGAGCAGCAATCTAGGGACAATATTCCTTTTA PCAM01000002.1_158490_173999__163399_164184_F1 4486 4910 RCMX01000002.1_384775_394054__390583_391359 p_0027 4887 p_0027 TGTTAGATT 2 + 1.0 intergenic CACCCATGGTGTAGTGCTGGCGACCGCGAAGCATTAGAAATCCTCGCCGAGAACGTGTTAGATTCAACATG RCMX01000002.1_384775_394054__390583_391359_F1 4634 5003 PHEW01000004.1_132984_144401__138084_138794 p_0013 5077 p_0013 TGACACCAT 1 + 0.79 intergenic TGACACCATCAGCAAGGAGGCTGTCGTGTCCACATCAACTCCGATCCCGGTGACCCCGGCAATCGCGATCA PHEW01000004.1_132984_144401__138084_138794_HeR 4992 5101 SHYU01000025.1_14851_22560__19193_19945 p_0049 5202 p_0049 ACAGAATTT 2 - 1.0 intergenic TGCCGCTGTACTTCGTTATACCCGCATCGGTACCATTGAACTATACGTCAGCGTGACAGAATTTGATAACC SHYU01000025.1_14851_22560__19193_19945_HeR 5095 5606 RFST01000005.1_21953_32497__29065_29826 p_0030 5389 p_0030 TGCAACAGA 1 - 1.0 intergenic TGCAACAGATCATTCATCGACTTTTCGTTCATCGAGGACAGGCGGTGGGCGCTGATGTGCGACACTCGGTG RFST01000005.1_21953_32497__29065_29826_F2 5388 5482 SHYU01000025.1_14851_22560__19193_19945 p_0048 5474 p_0048 AAACGAAAT 2 - 0.97 intergenic AGTCCGCGTCGTCATCACCAAGTCACGAACATGCGAATGAGCGTTCATCGCTCACAAACGAAATGAATGCG SHYU01000025.1_14851_22560__19193_19945_HeR 5095 5606 RCMX01000002.1_384775_394054__390583_391359 p_0028 5535 p_0028 TGTTAAGAA 2 + 1.0 intergenic CGAATTGCCAGCACAAGAGCGCGATCAGTGCCGCGTTGAGCGGAGAAGTGCCGCTTGTTAAGAATACTTCC RCMX01000002.1_384775_394054__390583_391359_HeR 5413 5809 VGOM01000003.1_9103_19480__13836_14603 p_0052 5556 p_0052 TGACCGATA 1 - 0.86 intergenic AGACTCCTGACAGCCCTCTCTCGATTCTCAACGGCTGGCTATGTGGGATATAATCTGACCGATACCATGTT VGOM01000003.1_9103_19480__13836_14603_HeR 5501 5837 PCAM01000002.1_158490_173999__163399_164184 p_0010 5704 p_0010 TGAGAATTA 3 - 0.98 intergenic AGTGACAGAAGTGGGCCAGCGGCACATCAAGGTTGAGATCACTTCGGATGTGGGTTGAGAATTAACGAGTG PCAM01000002.1_158490_173999__163399_164184_HeR 5695 5888 RGCW01000010.1_16107_27401__22036_22920 p_0034 5770 p_0034 ACGGGTGGG 1 - 0.73 intergenic ACGGGTGGGGCCGTCGCGATGTTTAGGATTCTGAACCTAGATCGCGCATGCGCTGCGGTAGGATGAGGCGA RGCW01000010.1_16107_27401__22036_22920_F1 5706 5930 RCMX01000002.1_384775_394054__390583_391359 p_0029 5783 p_0029 GTGATCGCG 1 + 0.66 intergenic GTGATCGCGGGTTTCCTGGAGCGCCTCGTGTGCTCGATGCGTTCTGCGTCACCGATGTAGGGTTTCCCCCG RCMX01000002.1_384775_394054__390583_391359_HeR 5413 5809 RGCW01000010.1_16107_27401__22036_22920 p_0033 5881 p_0033 GAATCCTAA 1 + 0.15 intergenic GAATCCTAAACATCGCGACGGCCCCACCCGTAGATTGTCCAAAAGGTCGCCTCACCGCTACCCTCAAGGGG RGCW01000010.1_16107_27401__22036_22920_HeR 5706 5930 PHFA01000043.1_7703_20121__12785_13546 p_0017 5979 p_0017 GGCACTCCC 1 + 0.57 intergenic GGCACTCCCTCGGCGCCGCCGTTTCGCGTACAATTCCGAAGCACCGCGCCGCTTTCGGCTATCGTATCCGG PHFA01000043.1_7703_20121__12785_13546_R1 5844 6018 WSXY01000001.1_237449_244867__241035_241793 p_0063 6308 p_0063 AGAATACTT 2 - 0.97 intergenic CTTCGGACAACAACATGATGCATATTACTGTGTCTGTCAAGGTAGTGTGAACAGCAGAATACTTTGGACGG WSXY01000001.1_237449_244867__241035_241793_R3 6192 6392 WSXY01000001.1_237449_244867__241035_241793 p_0062 6375 p_0062 AATATGCAT 1 + 0.99 intergenic TGGACCGTCCAAAGTATTCTGCTGTTCACACTACCTTGACAGACACAGTAATATGCATCATGTTGTTGTCC WSXY01000001.1_237449_244867__241035_241793_R4 6192 6392 VGOM01000003.1_9103_19480__13836_14603 p_0053 6878 p_0053 TTCTCCAAT 1 - 0.54 intergenic TTCTCCAATTGAATAAGCACAGACCCTGAAGTCTCTGAGGAGCAACTCAACTCACCGGTACGGTTGGAGTA VGOM01000003.1_9103_19480__13836_14603_R1 6850 6953 RGEL01000035.1_1017_11717__5821_6576 p_0036 6916 p_0036 GCACGTGCT 1 + 0.93 intergenic GCACGTGCTCATCACCAACGTCACGACGCCGTCATCGAACGGCGCACCGGTGTCGGTACGAATCGAAGGTG RGEL01000035.1_1017_11717__5821_6576_R2 6831 6959 RFST01000005.1_21953_32497__29065_29826 p_0032 6940 p_0032 AAGCGACGC 1 - 0.99 intergenic AAGCGACGCAAGGGGGAAAGACATGATGTCGACACTGTGGGAGGCGTTTCGCCGCTCGTTGATGCTGAACA RFST01000005.1_21953_32497__29065_29826_F1 6906 7113 RFST01000005.1_21953_32497__29065_29826 p_0031 7012 p_0031 TATTCCCGA 1 - 0.69 intergenic TATTCCCGATCACGACCCACACGGTCGGTCGGATCGCTCTCCGACAGGCGCTGTTGGGCAGACTGGCGGTG RFST01000005.1_21953_32497__29065_29826_F1 6906 7113 RGRJ01000028.1_6375_14007__10971_11762 p_0041 7218 p_0041 GAGAAGTTA 1 - 0.97 intergenic ACCCTCCGAAAACCCCCACTTCCGCCATCGGCACGTGGGGGTTTTCGTTGTCTAGGAGAAGTTACGATCTA RGRJ01000028.1_6375_14007__10971_11762_R4 7149 7303 SHYU01000025.1_14851_22560__19193_19945 p_0051 7286 p_0051 TGTCAACAT 2 - 1.0 intergenic ACTCATACGGCTCGGTGCGCTGACCAAATCACATATTCGTCATCATGACAATGGTTGTCAACATTCTTGAC SHYU01000025.1_14851_22560__19193_19945_R2 7255 7427 SHYU01000025.1_14851_22560__19193_19945 p_0050 7331 p_0050 TGACGAATA 2 + 1.0 intergenic GAACGTAGCAATTTAGCCAATACTTCGTCAAGAATGTTGACAACCATTGTCATGATGACGAATATGTGATT SHYU01000025.1_14851_22560__19193_19945_R3 7255 7427 QEUZ01000023.1_2571_10967__2571_3305 p_0020 7388 p_0020 ATGATCTCG 1 - 0.39 intergenic ATGATCTCGAACCGTTCGCCATCGGCGAGCGCCCCTTTCCGCGTCACTCGTGGTCGGGATCGTGCGATACA QEUZ01000023.1_2571_10967__2571_3305_R4 7007 7459 PHEU01000002.1_40688_54388__48312_49022 p_0012 7407 p_0012 TACATTGAA 2 - 0.99 intergenic TGGGGGCTGCCGTACCGCCTGTCGTTGGGTTATTGCCGTTCGCCTTGAACGCGCATACATTGAACACACAC PHEU01000002.1_40688_54388__48312_49022_F1 7384 7625 PHEU01000002.1_40688_54388__48312_49022 p_0011 7536 p_0011 ACGGCAGCC 1 + 0.94 intergenic ACGGCAGCCCCCAAACGTGACAGCGTAGCCATTCTTGATGCTGGGTACAATTCCCTGTGACACTCAAGGCC PHEU01000002.1_40688_54388__48312_49022_HeR 7384 7625 RGEL01000035.1_1017_11717__5821_6576 p_0037 7810 p_0037 CGGATTATT 2 + 1.0 intergenic GCTTAACAAAGTATTAAACGTCAGGTAACACGCGCATTTCGGTGTCGCCTGCGGGCGGATTATTCTTCGGG RGEL01000035.1_1017_11717__5821_6576_R3 7732 7812 QQUL01000006.1_1799_13599__8800_9564 p_0021 7819 p_0021 TCCAACAAT 2 - 0.64 intergenic CGACGACACGCCGAGCAACCGGGATTCCGAGGTCGGGCTGCGAATCTCGGGATGTTCCAACAATCGGGGCA QQUL01000006.1_1799_13599__8800_9564_HeR 7766 7917 QQUL01000006.1_1799_13599__8800_9564 p_0023 9025 p_0023 TATGATATT 2 - 1.0 intergenic ACTCTACTTTCGTCCGTGACGCTCGCGCTTTCATGCGTGTCACTTGTTGTGGAAGTATGATATTCTAATTT QQUL01000006.1_1799_13599__8800_9564_R2 9002 9107 QQUL01000006.1_1799_13599__8800_9564 p_0022 9105 p_0022 ACGAAAGTA 2 + 1.0 intergenic TATCATACTTCCACAACAAGTGACACGCATGAAAGCGCGAGCGTCACGGACGAAAGTAGAGTTTGGTGCTA QQUL01000006.1_1799_13599__8800_9564_R3 9002 9107 RGSD01000015.1_1_13590__5003_5740 p_0047 10744 p_0047 GGGAATAAT 2 - 1.0 intergenic ACCGAAACACGTGTGAGACATGGCTCATCGTTTGTCTCAAAAAGTTGTCAAATCGGGGAATAATCGGGAGA RGSD01000015.1_1_13590__5003_5740_R3 10712 10888 RGSD01000015.1_1_13590__5003_5740 p_0046 10784 p_0046 CAACTTTTT 2 + 1.0 intergenic GCACCTTAGATGCCCAGCGGCGCGCGGAATTTCTCCCGATTATTCCCCGATTTGACAACTTTTTGAGACAA RGSD01000015.1_1_13590__5003_5740_R4 10712 10888 QQUL01000006.1_1799_13599__8800_9564 p_0024 11099 p_0024 TAGTACTAA 2 - 0.94 intergenic ATGTCATCCGCATGGTCGTGTGGTTCCGTAGTACGACGAGTCCGACCGTCGGATTTAGTACTAATAAGGAG QQUL01000006.1_1799_13599__8800_9564_R4 11094 11190 RGPI01000012.1_3922_16980__9936_10673 p_0039 11702 p_0039 GGGAATAAT 2 - 1.0 intergenic ACCGAAACACGTGTGAGACATGGCTCATCGTTTGTCTCAAAAAGTTGTCAAATCGGGGAATAATCGGGAGA RGPI01000012.1_3922_16980__9936_10673_R3 11670 11846 RGPI01000012.1_3922_16980__9936_10673 p_0038 11742 p_0038 CAACTTTTT 2 + 1.0 intergenic GCACCTTAGATGCCCAGCGGCGCGCGGAATTTCTCCCGATTATTCCCCGATTTGACAACTTTTTGAGACAA RGPI01000012.1_3922_16980__9936_10673_R4 11670 11846 PAUB01000022.1_6413_27212__21000_22037 p_0002 14550 p_0002 TATTATATA 3 + 1.0 intergenic TCGATTCTCGCGCGAGCGAGAGAACGAGCGTCTACTCGTTTATATATTATATTATATATATGAAACGCAGA PAUB01000022.1_6413_27212__21000_22037_HeR 14360 14588