chrom	Lstart	Lend	Lstem	Rstart	Rend	Rstem	loop	match%	Indels	score	AT	GC	ATpairs	GCpairs	GTpairs	Center	Lseq	Rseq	intergenic	tailL	tailR	polyTL	polyTR	strand	TTseq	FACoPscore	locus_tag	type	start	end	strand_y	stream	seq	aug_seq	3primeUTR	3primeUTRlen	ID
QYPH01000023.1_7979_15181__10843_11601	6484	6496	13	6502	6514	13	5	76	0	11	65	34	70	30	0	6498	AAAACGGTCACAT	ATGTGGCATTTTT	True	TATAGACGA	GGCCATGAA	True	True	+	AAAACGGTCACAT GAGAA ATGTGGCATTTTT GGCCATGAA	46	QYPH01000023.1_7979_15181__10843_11601_R4	intergenic	6432	6583	-	down	GAAAACAAATGCCCTGGATTTGATCCTGTCTACTTGATTGCGGAATAGTCGTCAGATTTATTCATGGCCAAAAATGCCACATTTCTCATGTGACCGTTTTCGTCTATAACGTCAAAAATTAGTTGAGCCTTACAGATGTTCTGTCAATACG	CCTTCGAAGCAACTTTCGCTGTTTAGAAAACAAATGCCCTGGATTTGATCCTGTCTACTTGATTGCGGAATAGTCGTCAGATTTATTCATGGCCAAAAATGCCACATTTCTCATGTGACCGTTTTCGTCTATAACGTCAAAAATTAGTTGAGCCTTACAGATGTTCTGTCAATACGATGAGTGAGGTGAGTGAACCAACAA	CGTATTGACAGAACATCTGTAAGGCTCAACTAATTTTTGACGTTATAGACGAAAACGGTCACATGAGAAATGTGGCATTTTT	82	TTerm_0001
RECG01000016.1_16504_31561__23256_24059	2581	2593	13	2599	2611	13	5	100	0	26	53	46	53	46	0	2595	AAAAGCGCGATTC	GAATCGCGCTTTT	True	GTGAATGAA	GTTTGGGTC	True	True	+	AAAAGCGCGATTC AATCC GAATCGCGCTTTT GTTTGGGTC	76	RECG01000016.1_16504_31561__23256_24059_F4	intergenic	2558	2744	+	down	GTCATCTGAAAGATGTGAATGAAAAAGCGCGATTCAATCCGAATCGCGCTTTTGTTTGGGTCGCTTTTGTGCGGGTTTGGCATAGGCACAGGTCGCACACGGCTTGTCTTTGTTCTTCCGCATGCCTCTGATGACCAAGATGAAGATGATTGCCACCACCAACAAGATGAGTCCGTCAATCCAGGT	CCCTTTGCCCCCTAAAAAGCAATAAGTCATCTGAAAGATGTGAATGAAAAAGCGCGATTCAATCCGAATCGCGCTTTTGTTTGGGTCGCTTTTGTGCGGGTTTGGCATAGGCACAGGTCGCACACGGCTTGTCTTTGTTCTTCCGCATGCCTCTGATGACCAAGATGAAGATGATTGCCACCACCAACAAGATGAGTCCGTCAATCCAGGTCATATCATCACCTCGATCAACCGGC	GTCATCTGAAAGATGTGAATGAAAAAGCGCGATTCAATCCGAATCGCGCTTTT	53	TTerm_0002
RECG01000016.1_16504_31561__23256_24059	2581	2593	13	2599	2611	13	5	100	0	26	53	46	53	46	0	2595	AAAAGCGCGATTC	GAATCGCGCTTTT	True	GTGAATGAA	GTTTGGGTC	True	True	+	AAAAGCGCGATTC AATCC GAATCGCGCTTTT GTTTGGGTC	76	RECG01000016.1_16504_31561__23256_24059_F3	intergenic	2558	2744	-	down	ACCTGGATTGACGGACTCATCTTGTTGGTGGTGGCAATCATCTTCATCTTGGTCATCAGAGGCATGCGGAAGAACAAAGACAAGCCGTGTGCGACCTGTGCCTATGCCAAACCCGCACAAAAGCGACCCAAACAAAAGCGCGATTCGGATTGAATCGCGCTTTTTCATTCACATCTTTCAGATGAC	GCCGGTTGATCGAGGTGATGATATGACCTGGATTGACGGACTCATCTTGTTGGTGGTGGCAATCATCTTCATCTTGGTCATCAGAGGCATGCGGAAGAACAAAGACAAGCCGTGTGCGACCTGTGCCTATGCCAAACCCGCACAAAAGCGACCCAAACAAAAGCGCGATTCGGATTGAATCGCGCTTTTTCATTCACATCTTTCAGATGACTTATTGCTTTTTAGGGGGCAAAGGG	GTCATCTGAAAGATGTGAATGAAAAAGCGCGATTCAATCCGAATCGCGCTTTT	53	TTerm_0003
RECG01000016.1_16504_31561__23256_24059	7569	7576	8	7583	7590	8	6	100	0	16	37	62	37	62	0	7579	AAGACCGG	CCGGTCTT	True	CAACAAACA	TTGCTTGAG	False	True	+	AAGACCGG TGAAAG CCGGTCTT TTGCTTGAG	72	RECG01000016.1_16504_31561__23256_24059_HeR	intergenic	7556	7608	+	down	GACACAACAAACAAGACCGGTGAAAGCCGGTCTTTTGCTTGAGAGGTTTTTA	GCTGTTTGGCGCCATGCAACCGTAAGACACAACAAACAAGACCGGTGAAAGCCGGTCTTTTGCTTGAGAGGTTTTTATGTTCAAGAAAATCAGACAACCCGA	GACACAACAAACAAGACCGGTGAAAGCCGGTCTT	34	TTerm_0004
RECG01000016.1_16504_31561__23256_24059	8592	8606	15	8612	8626	15	5	93	0	25	66	33	71	28	0	8608	AAACAAAAGGACATG	CATGTCCTTTTCTTT	True	GTGCAAACA	CAGGTGGTC	True	True	+	AAACAAAAGGACATG GTCGA CATGTCCTTTTCTTT CAGGTGGTC	74	RECG01000016.1_16504_31561__23256_24059_R1	intergenic	8567	8626	+	down	GACATTTTTATTGTCAGTGCAAACAAACAAAAGGACATGGTCGACATGTCCTTTTCTTT	CGCCGGCATCGAAATCATGAAATAAGACATTTTTATTGTCAGTGCAAACAAACAAAAGGACATGGTCGACATGTCCTTTTCTTTCAGGTGGTCTTGACGGTGGTCTCGA	GACATTTTTATTGTCAGTGCAAACAAACAAAAGGACATGGTCGACATGTCCTTTTCTTT	59	TTerm_0005
RECG01000016.1_16504_31561__23256_24059	8592	8606	15	8612	8626	15	5	93	0	25	66	33	71	28	0	8608	AAACAAAAGGACATG	CATGTCCTTTTCTTT	True	GTGCAAACA	CAGGTGGTC	True	True	+	AAACAAAAGGACATG GTCGA CATGTCCTTTTCTTT CAGGTGGTC	74	RECG01000016.1_16504_31561__23256_24059_R2	intergenic	8567	8626	-	down	AAAGAAAAGGACATGTCGACCATGTCCTTTTGTTTGTTTGCACTGACAATAAAAATGTC	TCGAGACCACCGTCAAGACCACCTGAAAGAAAAGGACATGTCGACCATGTCCTTTTGTTTGTTTGCACTGACAATAAAAATGTCTTATTTCATGATTTCGATGCCGGCG	GACATTTTTATTGTCAGTGCAAACAAACAAAAGGACATGGTCGACATGTCCTTTTCTTT	59	TTerm_0006
RFTA01000016.1_1880_8501__4819_5577	1458	1470	13	1475	1487	13	4	92	0	21	26	73	25	75	0	1472	AGTGGGCGGCACC	GGTGTCGCCCACT	True	GAATCTTGA	TTTTTGCGT	False	True	+	AGTGGGCGGCACC TTCG GGTGTCGCCCACT TTTTTGCGT	74	RFTA01000016.1_1880_8501__4819_5577_F4	intergenic	1439	1588	+	down	TTAAATTTTCGAATCTTGAGTGGGCGGCACCTTCGGGTGTCGCCCACTTTTTTGCGTGCCGTTTTATCGCCACGCCTTACACATCTGTCAAAACCGAACGCCGCAAGAAAAACAGTCGATGTGTATAAGAGGTGTATAACCTATGAGCA	CAGCCTGTGGCAATTCGCTAAGTAATTAAATTTTCGAATCTTGAGTGGGCGGCACCTTCGGGTGTCGCCCACTTTTTTGCGTGCCGTTTTATCGCCACGCCTTACACATCTGTCAAAACCGAACGCCGCAAGAAAAACAGTCGATGTGTATAAGAGGTGTATAACCTATGAGCATGGCCAGAACAAACATAGATATTGA	TTAAATTTTCGAATCTTGAGTGGGCGGCACCTTCGGGTGTCGCCCACT	48	TTerm_0007
RGVG01000002.1_1_9046__3946_4767	4781	4797	17	4802	4818	17	4	82	0	19	50	50	42	57	0	4799	AAGAATCTGGCCGCATC	GATGCGGCCTTTTTCTT	True	CAAACCACA	TAGTCGAGC	False	True	+	AAGAATCTGGCCGCATC TTTT GATGCGGCCTTTTTCTT TAGTCGAGC	70	RGVG01000002.1_1_9046__3946_4767_HeR	intergenic	4767	4818	+	down	AGCCACAAACCACAAGAATCTGGCCGCATCTTTTGATGCGGCCTTTTTCTT	GATTATTCCGGCACTAACAACCTAAAGCCACAAACCACAAGAATCTGGCCGCATCTTTTGATGCGGCCTTTTTCTTTAGTCGAGCAGCTGCTGAACTCGCT	AGCCACAAACCACAAGAATCTGGCCGCATCTTTTGATGCGGCCTTTTTCTT	51	TTerm_0008
RGVG01000002.1_1_9046__3946_4767	4781	4797	17	4802	4818	17	4	82	0	19	50	50	42	57	0	4799	AAGAATCTGGCCGCATC	GATGCGGCCTTTTTCTT	True	CAAACCACA	TAGTCGAGC	False	True	+	AAGAATCTGGCCGCATC TTTT GATGCGGCCTTTTTCTT TAGTCGAGC	70	RGVG01000002.1_1_9046__3946_4767_R1	intergenic	4767	4818	-	down	AAGAAAAAGGCCGCATCAAAAGATGCGGCCAGATTCTTGTGGTTTGTGGCT	AGCGAGTTCAGCAGCTGCTCGACTAAAGAAAAAGGCCGCATCAAAAGATGCGGCCAGATTCTTGTGGTTTGTGGCTTTAGGTTGTTAGTGCCGGAATAATC	AGCCACAAACCACAAGAATCTGGCCGCATCTTTTGATGCGGCCTTTTTCTT	51	TTerm_0009
QYPH01000023.1_7979_15181__10843_11601	6484	6496	13	6502	6514	13	5	76	0	11	65	34	70	30	0	6498	AAAACGGTCACAT	ATGTGGCATTTTT	True	TATAGACGA	GGCCATGAA	True	True	-	AAAAATGCCACAT TTCTC ATGTGACCGTTTT TCGTCTATA	46	QYPH01000023.1_7979_15181__10843_11601_R4	intergenic	6432	6583	-	down	GAAAACAAATGCCCTGGATTTGATCCTGTCTACTTGATTGCGGAATAGTCGTCAGATTTATTCATGGCCAAAAATGCCACATTTCTCATGTGACCGTTTTCGTCTATAACGTCAAAAATTAGTTGAGCCTTACAGATGTTCTGTCAATACG	CCTTCGAAGCAACTTTCGCTGTTTAGAAAACAAATGCCCTGGATTTGATCCTGTCTACTTGATTGCGGAATAGTCGTCAGATTTATTCATGGCCAAAAATGCCACATTTCTCATGTGACCGTTTTCGTCTATAACGTCAAAAATTAGTTGAGCCTTACAGATGTTCTGTCAATACGATGAGTGAGGTGAGTGAACCAACAA	GAAAACAAATGCCCTGGATTTGATCCTGTCTACTTGATTGCGGAATAGTCGTCAGATTTATTCATGGCCAAAAATGCCACATTTCTCATGTGACCGTTT	99	TTerm_0010
QYPT01000012.1_24867_34532__29339_30100	1398	1408	11	1413	1423	11	4	81	0	12	54	45	55	44	0	1410	AAAAGTTAGGC	GCCTACCTGTT	True	TACGCGTAA	AGAAATTTA	True	False	-	AACAGGTAGGC AAAA GCCTAACTTTT TTACGCGTA	56	QYPT01000012.1_24867_34532__29339_30100_F3	intergenic	1374	1607	-	down	AGCGCATTTTTCGCTAGTGAGATGAAAGTCTCAACTAGTGGATGAGAGATTAAGAGCGAATTTCCAGCGTGAAATAAGGGTTTTTTTGCTAGTGCTTTTACTTTCTAATAGCACGATGTGAAATAAAAACGCGCGACACGCGGCGAAAGTGTTGGACTATGCGCTTTTTACTGCGTAAATTTCTAACAGGTAGGCAAAAGCCTAACTTTTTACGCGTACATAAGGGGATTTCC	AACCGCAGACAATTCCAGCGAAATAAGCGCATTTTTCGCTAGTGAGATGAAAGTCTCAACTAGTGGATGAGAGATTAAGAGCGAATTTCCAGCGTGAAATAAGGGTTTTTTTGCTAGTGCTTTTACTTTCTAATAGCACGATGTGAAATAAAAACGCGCGACACGCGGCGAAAGTGTTGGACTATGCGCTTTTTACTGCGTAAATTTCTAACAGGTAGGCAAAAGCCTAACTTTTTACGCGTACATAAGGGGATTTCCATGAACAAGGCCCAATTCATTGCCG	AGCGCATTTTTCGCTAGTGAGATGAAAGTCTCAACTAGTGGATGAGAGATTAAGAGCGAATTTCCAGCGTGAAATAAGGGTTTTTTTGCTAGTGCTTTTACTTTCTAATAGCACGATGTGAAATAAAAACGCGCGACACGCGGCGAAAGTGTTGGACTATGCGCTTTTTACTGCGTAAATTTCTAACAGGTAGGCAAAAGCCTAACTTT	209	TTerm_0011
RECG01000016.1_16504_31561__23256_24059	2581	2593	13	2599	2611	13	5	100	0	26	53	46	53	46	0	2595	AAAAGCGCGATTC	GAATCGCGCTTTT	True	GTGAATGAA	GTTTGGGTC	True	True	-	AAAAGCGCGATTC GGATT GAATCGCGCTTTT TTCATTCAC	76	RECG01000016.1_16504_31561__23256_24059_F4	intergenic	2558	2744	+	down	GTCATCTGAAAGATGTGAATGAAAAAGCGCGATTCAATCCGAATCGCGCTTTTGTTTGGGTCGCTTTTGTGCGGGTTTGGCATAGGCACAGGTCGCACACGGCTTGTCTTTGTTCTTCCGCATGCCTCTGATGACCAAGATGAAGATGATTGCCACCACCAACAAGATGAGTCCGTCAATCCAGGT	CCCTTTGCCCCCTAAAAAGCAATAAGTCATCTGAAAGATGTGAATGAAAAAGCGCGATTCAATCCGAATCGCGCTTTTGTTTGGGTCGCTTTTGTGCGGGTTTGGCATAGGCACAGGTCGCACACGGCTTGTCTTTGTTCTTCCGCATGCCTCTGATGACCAAGATGAAGATGATTGCCACCACCAACAAGATGAGTCCGTCAATCCAGGTCATATCATCACCTCGATCAACCGGC	ACCTGGATTGACGGACTCATCTTGTTGGTGGTGGCAATCATCTTCATCTTGGTCATCAGAGGCATGCGGAAGAACAAAGACAAGCCGTGTGCGACCTGTGCCTATGCCAAACCCGCACAAAAGCGACCCAAACAAAAGCGCGATTCGGATTGAATCGCGCTTT	163	TTerm_0012
RECG01000016.1_16504_31561__23256_24059	2581	2593	13	2599	2611	13	5	100	0	26	53	46	53	46	0	2595	AAAAGCGCGATTC	GAATCGCGCTTTT	True	GTGAATGAA	GTTTGGGTC	True	True	-	AAAAGCGCGATTC GGATT GAATCGCGCTTTT TTCATTCAC	76	RECG01000016.1_16504_31561__23256_24059_F3	intergenic	2558	2744	-	down	ACCTGGATTGACGGACTCATCTTGTTGGTGGTGGCAATCATCTTCATCTTGGTCATCAGAGGCATGCGGAAGAACAAAGACAAGCCGTGTGCGACCTGTGCCTATGCCAAACCCGCACAAAAGCGACCCAAACAAAAGCGCGATTCGGATTGAATCGCGCTTTTTCATTCACATCTTTCAGATGAC	GCCGGTTGATCGAGGTGATGATATGACCTGGATTGACGGACTCATCTTGTTGGTGGTGGCAATCATCTTCATCTTGGTCATCAGAGGCATGCGGAAGAACAAAGACAAGCCGTGTGCGACCTGTGCCTATGCCAAACCCGCACAAAAGCGACCCAAACAAAAGCGCGATTCGGATTGAATCGCGCTTTTTCATTCACATCTTTCAGATGACTTATTGCTTTTTAGGGGGCAAAGGG	ACCTGGATTGACGGACTCATCTTGTTGGTGGTGGCAATCATCTTCATCTTGGTCATCAGAGGCATGCGGAAGAACAAAGACAAGCCGTGTGCGACCTGTGCCTATGCCAAACCCGCACAAAAGCGACCCAAACAAAAGCGCGATTCGGATTGAATCGCGCTTT	163	TTerm_0013
RECG01000016.1_16504_31561__23256_24059	5091	5096	6	5101	5106	6	4	100	0	12	33	66	33	66	0	5098	AAGGGG	CCCCTT	True	AAATAAAAA	CATATGGTT	True	False	-	AAGGGG GAAA CCCCTT TTTTTATTT	56	RECG01000016.1_16504_31561__23256_24059_F1	intergenic	4992	5118	-	down	ATCAACCATATGAAGGGGGAAACCCCTTTTTTATTTATAACGCTAATCATAATCTTTACAACTTCCTTTGACTTTGTCTTGTTGATTCCTATAATGGAAAGTGTATAACACAATGGAGAACTGAAC	ACACATTGACAGAAAATAACACATGATCAACCATATGAAGGGGGAAACCCCTTTTTTATTTATAACGCTAATCATAATCTTTACAACTTCCTTTGACTTTGTCTTGTTGATTCCTATAATGGAAAGTGTATAACACAATGGAGAACTGAACATGAGAATCAAACCAGCCAGACATC	ATCAACCATATGAAGGGGGAAACCCCT	27	TTerm_0014
RECG01000016.1_16504_31561__23256_24059	8592	8606	15	8612	8626	15	5	93	0	25	66	33	71	28	0	8608	AAACAAAAGGACATG	CATGTCCTTTTCTTT	True	GTGCAAACA	CAGGTGGTC	True	True	-	AAAGAAAAGGACATG TCGAC CATGTCCTTTTGTTT TGTTTGCAC	74	RECG01000016.1_16504_31561__23256_24059_R1	intergenic	8567	8626	+	down	GACATTTTTATTGTCAGTGCAAACAAACAAAAGGACATGGTCGACATGTCCTTTTCTTT	CGCCGGCATCGAAATCATGAAATAAGACATTTTTATTGTCAGTGCAAACAAACAAAAGGACATGGTCGACATGTCCTTTTCTTTCAGGTGGTCTTGACGGTGGTCTCGA	AAAGAAAAGGACATGTCGACCATGTCCTTTTGTT	34	TTerm_0015
RECG01000016.1_16504_31561__23256_24059	8592	8606	15	8612	8626	15	5	93	0	25	66	33	71	28	0	8608	AAACAAAAGGACATG	CATGTCCTTTTCTTT	True	GTGCAAACA	CAGGTGGTC	True	True	-	AAAGAAAAGGACATG TCGAC CATGTCCTTTTGTTT TGTTTGCAC	74	RECG01000016.1_16504_31561__23256_24059_R2	intergenic	8567	8626	-	down	AAAGAAAAGGACATGTCGACCATGTCCTTTTGTTTGTTTGCACTGACAATAAAAATGTC	TCGAGACCACCGTCAAGACCACCTGAAAGAAAAGGACATGTCGACCATGTCCTTTTGTTTGTTTGCACTGACAATAAAAATGTCTTATTTCATGATTTCGATGCCGGCG	AAAGAAAAGGACATGTCGACCATGTCCTTTTGTT	34	TTerm_0016
RECG01000016.1_16504_31561__23256_24059	13017	13026	10	13036	13045	10	9	90	0	15	55	45	55	44	0	13030	AAAGCCATGA	TCATGGCCTT	True	TGATGAAAA	GCGTCTATT	True	False	-	AAGGCCATGA ATCGTAAGA TCATGGCTTT TTTTCATCA	54	RECG01000016.1_16504_31561__23256_24059_R4	intergenic	12961	13050	-	down	GACGCAAGGCCATGAATCGTAAGATCATGGCTTTTTTCATCAGACAAGAACATGTATAATGAAAGCATGAAACCATAAGGAGCAACCCT	TGGAATCATTCGGTGTCACCAAATAGACGCAAGGCCATGAATCGTAAGATCATGGCTTTTTTCATCAGACAAGAACATGTATAATGAAAGCATGAAACCATAAGGAGCAACCCTATGTTCGAAGATCACCATCTCATCA	GACGCAAGGCCATGAATCGTAAGATCATGGCTT	33	TTerm_0017