##gff-version 3 # Sequence Data: seqnum=1;seqlen=10350;seqhdr="RS14430 putative operon" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1 RS14430 Prodigal_v2.6.3 CDS 104 541 66.0 + 0 ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256;conf=100.00;score=65.96;cscore=54.12;sscore=11.84;rscore=5.66;uscore=3.29;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 627 1214 101.7 + 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299;conf=100.00;score=101.71;cscore=90.39;sscore=11.32;rscore=5.66;uscore=2.77;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 1514 2134 77.3 - 0 ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.240;conf=100.00;score=78.47;cscore=68.75;sscore=9.72;rscore=3.21;uscore=2.41;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 2142 2909 130.4 - 0 ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288;conf=100.00;score=131.21;cscore=116.99;sscore=14.23;rscore=5.66;uscore=4.83;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 2950 3771 128.1 - 0 ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274;conf=100.00;score=127.47;cscore=116.26;sscore=11.21;rscore=5.83;uscore=3.13;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 4128 6038 340.4 - 0 ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307;conf=99.99;score=340.44;cscore=328.61;sscore=11.83;rscore=5.66;uscore=3.28;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 6317 7102 125.8 - 0 ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.263;conf=100.00;score=125.20;cscore=113.35;sscore=11.85;rscore=7.43;uscore=2.18;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 7319 7549 45.2 - 0 ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.281;conf=100.00;score=46.30;cscore=35.05;sscore=11.25;rscore=6.78;uscore=0.76;tscore=2.64; RS14430 Prodigal_v2.6.3 CDS 7568 8716 94.4 - 0 ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.280;conf=100.00;score=95.67;cscore=83.14;sscore=12.52;rscore=5.66;uscore=2.68;tscore=2.90; RS14430 Prodigal_v2.6.3 CDS 8716 10230 236.5 - 0 ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.280;conf=99.99;score=236.52;cscore=224.74;sscore=11.78;rscore=7.43;uscore=1.45;tscore=2.90; chrom db type start end name strand score description CDS_0006 ProPr promoter 67.0 138.0 prom_0001 + 1.0 ID=p_0001;locus_tag=p_0001;TSS=138.0;class=intergenic;min10seq=TGATATAAA;min10score=4;min10class=weak;promseq=TAGATTAAGATTAGAAAGTAAATTTTAGATTGTAACTTAGGATTTTATGGAAATATGATATAAAATAAAAA CDS_0007 ProPr promoter 78.0 149.0 prom_0002 + 0.51 ID=p_0002;locus_tag=p_0002;TSS=149.0;class=intergenic;min10seq=AATTTAATA;min10score=3;min10class=weak;promseq=GGACTTTTTTAATGATAATACAAAGTCTTTTGAAAATAACTTTAATTAAGTAAAAAATTTAATACATAAAT RS14430 ProPr promoter 6180 6251 1.0 - . ID=p_0001;locus_tag=p_0001;TSS=6180;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TAGATTAAGATTAGAAAGTAAATTTTAGATTGTAACTTAGGATTTTATGGAAATATGATATAAAATAAAAA RS14430 ProPr promoter 7174 7245 0.51 - . ID=p_0002;locus_tag=p_0002;TSS=7174;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=GGACTTTTTTAATGATAATACAAAGTCTTTTGAAAATAACTTTAATTAAGTAAAAAATTTAATACATAAAT RS14430 ProPr gene 104 541 CDS_0001 + 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_1; RS14430 ProPr gene 627 1214 CDS_0002 + 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_2; RS14430 ProPr gene 1514 2134 CDS_0003 - 100.00 ID=CDS_0003;locus_tag=CDS_0003;RBS=AGxAGG/AGGxGG;conf=100.00;prodigalID=1_3; RS14430 ProPr gene 2142 2909 CDS_0004 - 100.00 ID=CDS_0004;locus_tag=CDS_0004;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_4; RS14430 ProPr gene 2950 3771 CDS_0005 - 100.00 ID=CDS_0005;locus_tag=CDS_0005;RBS=AGGA;conf=100.00;prodigalID=1_5; RS14430 ProPr gene 4128 6038 CDS_0006 - 99.99 ID=CDS_0006;locus_tag=CDS_0006;RBS=GGAG/GAGG;conf=99.99;prodigalID=1_6; RS14430 ProPr gene 6317 7102 CDS_0007 - 100.00 ID=CDS_0007;locus_tag=CDS_0007;RBS=AGGAG;conf=100.00;prodigalID=1_7; RS14430 ProPr gene 7319 7549 CDS_0008 - 100.00 ID=CDS_0008;locus_tag=CDS_0008;RBS=AGGAG;conf=100.00;prodigalID=1_8; RS14430 ProPr gene 7568 8716 CDS_0009 - 100.00 ID=CDS_0009;locus_tag=CDS_0009;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_9; RS14430 ProPr gene 8716 10230 CDS_0010 - 99.99 ID=CDS_0010;locus_tag=CDS_0010;RBS=AGGAG;conf=99.99;prodigalID=1_10; RS14430 ProPr promoter 6180 6251 1.0 - . ID=p_0001;locus_tag=p_0001;TSS=6180;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TAGATTAAGATTAGAAAGTAAATTTTAGATTGTAACTTAGGATTTTATGGAAATATGATATAAAATAAAAA RS14430 ProPr promoter 7174 7245 0.51 - . ID=p_0002;locus_tag=p_0002;TSS=7174;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=GGACTTTTTTAATGATAATACAAAGTCTTTTGAAAATAACTTTAATTAAGTAAAAAATTTAATACATAAAT RS14430 FACoP_TransTerm TransTerm 7288 7322 48 + . ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0008;FACoPscore=48;TTseq=ATAAATTAATATTTA AAGTC TAACTACTAATTTAT TTTCTTGTC RS14430 FACoP operon 104 1214 . + #37A397 ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001,CDS_0002; RS14430 FACoP operon 1514 3771 . - #45CCBC ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0003,CDS_0004,CDS_0005; RS14430 FACoP operon 4128 6038 . - #37A397 ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0006; RS14430 FACoP operon 6317 7102 . - #45CCBC ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0007; RS14430 FACoP operon 7319 10230 . - #37A397 ID=operon_0005;locus_tag=operon_0005;Name=operon_0005;operon_members=CDS_0008,CDS_0009,CDS_0010; RS14430 ProPr gene 104 541 CDS_0001 + 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_1; RS14430 ProPr gene 627 1214 CDS_0002 + 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_2; RS14430 ProPr gene 1514 2134 CDS_0003 - 100.00 ID=CDS_0003;locus_tag=CDS_0003;RBS=AGxAGG/AGGxGG;conf=100.00;prodigalID=1_3; RS14430 ProPr gene 2142 2909 CDS_0004 - 100.00 ID=CDS_0004;locus_tag=CDS_0004;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_4; RS14430 ProPr gene 2950 3771 CDS_0005 - 100.00 ID=CDS_0005;locus_tag=CDS_0005;RBS=AGGA;conf=100.00;prodigalID=1_5; RS14430 ProPr gene 4128 6038 CDS_0006 - 99.99 ID=CDS_0006;locus_tag=CDS_0006;RBS=GGAG/GAGG;conf=99.99;prodigalID=1_6; RS14430 ProPr gene 6317 7102 CDS_0007 - 100.00 ID=CDS_0007;locus_tag=CDS_0007;RBS=AGGAG;conf=100.00;prodigalID=1_7; RS14430 ProPr gene 7319 7549 CDS_0008 - 100.00 ID=CDS_0008;locus_tag=CDS_0008;RBS=AGGAG;conf=100.00;prodigalID=1_8; RS14430 ProPr gene 7568 8716 CDS_0009 - 100.00 ID=CDS_0009;locus_tag=CDS_0009;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_9; RS14430 ProPr gene 8716 10230 CDS_0010 - 99.99 ID=CDS_0010;locus_tag=CDS_0010;RBS=AGGAG;conf=99.99;prodigalID=1_10;