##gff-version 3 # Sequence Data: seqnum=1;seqlen=12689;seqhdr="RS03235 putative operon" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1 RS03235 Prodigal_v2.6.3 CDS 1 288 41.3 + 0 ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.233;conf=99.99;score=41.29;cscore=38.07;sscore=3.22;rscore=0.00;uscore=0.00;tscore=3.22; RS03235 Prodigal_v2.6.3 CDS 761 1195 69.0 + 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.331;conf=100.00;score=68.37;cscore=60.36;sscore=8.01;rscore=2.72;uscore=3.05;tscore=2.90; RS03235 Prodigal_v2.6.3 CDS 1843 2952 140.3 + 0 ID=1_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262;conf=100.00;score=139.64;cscore=137.25;sscore=2.39;rscore=5.66;uscore=1.87;tscore=-4.48; RS03235 Prodigal_v2.6.3 CDS 3017 5140 323.5 + 0 ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304;conf=99.99;score=323.51;cscore=324.40;sscore=-0.88;rscore=-0.99;uscore=-2.79;tscore=2.90; RS03235 Prodigal_v2.6.3 CDS 5155 10365 793.2 + 0 ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312;conf=99.99;score=794.31;cscore=788.52;sscore=5.78;rscore=2.72;uscore=-0.95;tscore=2.90; RS03235 Prodigal_v2.6.3 CDS 10590 12689 272.0 - 0 ID=1_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.321;conf=99.99;score=272.02;cscore=268.80;sscore=3.22;rscore=0.00;uscore=0.00;tscore=3.22; chrom db type start end name strand score description CDS_0002 ProPr promoter 354 425.0 prom_0001 + 0.71 ID=p_0001;locus_tag=p_0001;TSS=425.0;class=intergenic;min10seq=TGTAATCTA;min10score=2;min10class=weak;promseq=GAAAATGCAAATTTATTAAAAATAAAAAACAAATTTAAATATAGTCTAAAAACTTTGTAATCTACTTAAGG RS03235 ProPr promoter 643 714 0.71 + . ID=p_0001;locus_tag=p_0001;TSS=714;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=GAAAATGCAAATTTATTAAAAATAAAAAACAAATTTAAATATAGTCTAAAAACTTTGTAATCTACTTAAGG RS03235 ProPr gene 1 288 CDS_0001 + 99.99 ID=CDS_0001;locus_tag=CDS_0001;RBS=None;conf=99.99;prodigalID=1_1; RS03235 ProPr gene 761 1195 CDS_0002 + 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGA/GAG/AGG;conf=100.00;prodigalID=1_2; RS03235 ProPr gene 1843 2952 CDS_0003 + 100.00 ID=CDS_0003;locus_tag=CDS_0003;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_3; RS03235 ProPr gene 3017 5140 CDS_0004 + 99.99 ID=CDS_0004;locus_tag=CDS_0004;RBS=None;conf=99.99;prodigalID=1_4; RS03235 ProPr gene 5155 10365 CDS_0005 + 99.99 ID=CDS_0005;locus_tag=CDS_0005;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_5; RS03235 ProPr gene 10590 12689 CDS_0006 - 99.99 ID=CDS_0006;locus_tag=CDS_0006;RBS=None;conf=99.99;prodigalID=1_6; RS03235 ProPr promoter 643 714 0.71 + . ID=p_0001;locus_tag=p_0001;TSS=714;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=GAAAATGCAAATTTATTAAAAATAAAAAACAAATTTAAATATAGTCTAAAAACTTTGTAATCTACTTAAGG RS03235 FACoP_TransTerm TransTerm 10402 10444 60 + . ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0005;FACoPscore=60;TTseq=AAAAGGGGATGTTTCAAA ATGAAAA TTTGAATCATCTCCTTTT TGTAAAAAA RS03235 FACoP_TransTerm TransTerm 10402 10444 60 + . ID=TTerm_0002;locus_tag=TTerm_0002;Upstream_gene=CDS_0006;FACoPscore=60;TTseq=AAAAGGGGATGTTTCAAA ATGAAAA TTTGAATCATCTCCTTTT TGTAAAAAA RS03235 FACoP_TransTerm TransTerm 10472 10501 22 + . ID=TTerm_0003;locus_tag=TTerm_0003;Upstream_gene=CDS_0005;FACoPscore=22;TTseq=AAAATTTGTAAAA TATG TTTTATATAATTT TGATTAGAA RS03235 FACoP_TransTerm TransTerm 10472 10501 22 + . ID=TTerm_0004;locus_tag=TTerm_0004;Upstream_gene=CDS_0006;FACoPscore=22;TTseq=AAAATTTGTAAAA TATG TTTTATATAATTT TGATTAGAA RS03235 FACoP_TransTerm TransTerm 10489 10514 32 + . ID=TTerm_0005;locus_tag=TTerm_0005;Upstream_gene=CDS_0005;FACoPscore=32;TTseq=TTTTATATAAT TTTG ATTAGAAAAAA GCTCCTTTT RS03235 FACoP_TransTerm TransTerm 10489 10514 32 + . ID=TTerm_0006;locus_tag=TTerm_0006;Upstream_gene=CDS_0006;FACoPscore=32;TTseq=TTTTATATAAT TTTG ATTAGAAAAAA GCTCCTTTT RS03235 FACoP_TransTerm TransTerm 531 548 32 - . ID=TTerm_0007;locus_tag=TTerm_0007;Upstream_gene=CDS_0001;FACoPscore=32;TTseq=TGTATT TTATGT AATACA AGTTGTTTT RS03235 FACoP_TransTerm TransTerm 10402 10444 60 - . ID=TTerm_0008;locus_tag=TTerm_0008;Upstream_gene=CDS_0005;FACoPscore=60;TTseq=AAAAGGAGATGATTCAAA TTTTCAT TTTGAAACATCCCCTTTT TGTAAATTT RS03235 FACoP_TransTerm TransTerm 10402 10444 60 - . ID=TTerm_0009;locus_tag=TTerm_0009;Upstream_gene=CDS_0006;FACoPscore=60;TTseq=AAAAGGAGATGATTCAAA TTTTCAT TTTGAAACATCCCCTTTT TGTAAATTT RS03235 FACoP_TransTerm TransTerm 10472 10501 22 - . ID=TTerm_0010;locus_tag=TTerm_0010;Upstream_gene=CDS_0005;FACoPscore=22;TTseq=AAATTATATAAAA CATA TTTTACAAATTTT TAAACTCAA RS03235 FACoP_TransTerm TransTerm 10472 10501 22 - . ID=TTerm_0011;locus_tag=TTerm_0011;Upstream_gene=CDS_0006;FACoPscore=22;TTseq=AAATTATATAAAA CATA TTTTACAAATTTT TAAACTCAA RS03235 FACoP_TransTerm TransTerm 10489 10514 32 - . ID=TTerm_0012;locus_tag=TTerm_0012;Upstream_gene=CDS_0005;FACoPscore=32;TTseq=TTTTTTCTAAT CAAA ATTATATAAAA ACATATTTT RS03235 FACoP_TransTerm TransTerm 10489 10514 32 - . ID=TTerm_0013;locus_tag=TTerm_0013;Upstream_gene=CDS_0006;FACoPscore=32;TTseq=TTTTTTCTAAT CAAA ATTATATAAAA ACATATTTT RS03235 FACoP operon 1 288 . + #37A397 ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001; RS03235 FACoP operon 761 1195 . + #45CCBC ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0002; RS03235 FACoP operon 1843 10365 . + #37A397 ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0003,CDS_0004,CDS_0005; RS03235 FACoP operon 10590 12689 . - #45CCBC ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0006; RS03235 ProPr gene 1 288 CDS_0001 + 99.99 ID=CDS_0001;locus_tag=CDS_0001;RBS=None;conf=99.99;prodigalID=1_1; RS03235 ProPr gene 761 1195 CDS_0002 + 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGA/GAG/AGG;conf=100.00;prodigalID=1_2; RS03235 ProPr gene 1843 2952 CDS_0003 + 100.00 ID=CDS_0003;locus_tag=CDS_0003;RBS=GGAG/GAGG;conf=100.00;prodigalID=1_3; RS03235 ProPr gene 3017 5140 CDS_0004 + 99.99 ID=CDS_0004;locus_tag=CDS_0004;RBS=None;conf=99.99;prodigalID=1_4; RS03235 ProPr gene 5155 10365 CDS_0005 + 99.99 ID=CDS_0005;locus_tag=CDS_0005;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_5; RS03235 ProPr gene 10590 12689 CDS_0006 - 99.99 ID=CDS_0006;locus_tag=CDS_0006;RBS=None;conf=99.99;prodigalID=1_6;