##gff-version  3
# Sequence Data: seqnum=1;seqlen=13072;seqhdr="rs13350 putative operon"
# Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1
rs13350	Prodigal_v2.6.3	CDS	28	1368	202.8	-	0	ID=1_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.280;conf=99.99;score=202.18;cscore=208.58;sscore=-6.40;rscore=-0.99;uscore=-0.27;tscore=-4.48;
rs13350	Prodigal_v2.6.3	CDS	1594	1794	29.2	-	0	ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323;conf=99.91;score=30.47;cscore=21.47;sscore=9.00;rscore=4.62;uscore=0.82;tscore=2.29;
rs13350	Prodigal_v2.6.3	CDS	1796	2728	121.4	-	0	ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.301;conf=100.00;score=122.16;cscore=107.20;sscore=14.95;rscore=7.43;uscore=3.83;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	2773	3705	131.8	-	0	ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311;conf=100.00;score=132.52;cscore=121.14;sscore=11.38;rscore=7.43;uscore=0.37;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	3760	5049	196.4	-	0	ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.266;conf=99.99;score=197.32;cscore=191.16;sscore=6.16;rscore=7.43;uscore=2.25;tscore=-4.48;
rs13350	Prodigal_v2.6.3	CDS	5078	5770	110.3	-	0	ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277;conf=100.00;score=111.46;cscore=99.23;sscore=12.23;rscore=7.43;uscore=0.78;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	5785	6543	112.2	-	0	ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.271;conf=100.00;score=112.24;cscore=101.97;sscore=10.27;rscore=7.43;uscore=-0.06;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	6543	7004	68.8	-	0	ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.273;conf=100.00;score=69.85;cscore=60.39;sscore=9.46;rscore=7.43;uscore=-1.91;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	7026	7289	42.9	-	0	ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.288;conf=99.99;score=42.86;cscore=33.60;sscore=9.26;rscore=2.72;uscore=3.64;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	7393	8166	125.1	-	0	ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291;conf=100.00;score=125.15;cscore=115.29;sscore=9.85;rscore=5.83;uscore=1.12;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	8258	8980	105.0	-	0	ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.270;conf=100.00;score=106.02;cscore=101.61;sscore=4.40;rscore=2.72;uscore=-2.22;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	9005	9877	90.3	-	0	ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.257;conf=100.00;score=89.67;cscore=86.68;sscore=2.99;rscore=-0.99;uscore=1.74;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	10168	11442	227.2	-	0	ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.335;conf=99.99;score=226.58;cscore=223.06;sscore=3.51;rscore=2.72;uscore=-1.45;tscore=2.90;
rs13350	Prodigal_v2.6.3	CDS	11726	12886	240.7	-	0	ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355;conf=99.99;score=240.70;cscore=234.95;sscore=5.74;rscore=2.72;uscore=0.13;tscore=2.90;
chrom	db	type	start	end	name	strand	score	description
CDS_0013	ProPr	promoter	39.0	110.0	prom_0002	+	1.0	ID=p_0002;locus_tag=p_0002;TSS=110.0;class=intergenic;min10seq=TGATAAAAT;min10score=4;min10class=weak;promseq=TTTGTTCAATTTAGATAGTTAGTTTGTGGCTAGACTTAAAAATATTTTTAAATATTGATAAAATTTAAAAA
CDS_0001	ProPr	promoter	94.0	165.0	prom_0001	+	0.99	ID=p_0001;locus_tag=p_0001;TSS=165.0;class=intergenic;min10seq=ATCATAAAA;min10score=3;min10class=weak;promseq=TATTGACTATTAGAATTAAAATGTGTTATTATGACATGAAATGCTTAAAAATGCTATCATAAAATATAATA
rs13350	ProPr	promoter	1424	1495	0.99	-	.	ID=p_0001;locus_tag=p_0001;TSS=1424;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TATTGACTATTAGAATTAAAATGTGTTATTATGACATGAAATGCTTAAAAATGCTATCATAAAATATAATA
rs13350	ProPr	promoter	11615	11686	1.0	-	.	ID=p_0002;locus_tag=p_0002;TSS=11615;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=TTTGTTCAATTTAGATAGTTAGTTTGTGGCTAGACTTAAAAATATTTTTAAATATTGATAAAATTTAAAAA
rs13350	ProPr	gene	28	1368	CDS_0001	-	99.99	ID=CDS_0001;locus_tag=CDS_0001;RBS=None;conf=99.99;prodigalID=1_1;
rs13350	ProPr	gene	1594	1794	CDS_0002	-	99.91	ID=CDS_0002;locus_tag=CDS_0002;RBS=AGGA;conf=99.91;prodigalID=1_2;
rs13350	ProPr	gene	1796	2728	CDS_0003	-	100.00	ID=CDS_0003;locus_tag=CDS_0003;RBS=AGGAG;conf=100.00;prodigalID=1_3;
rs13350	ProPr	gene	2773	3705	CDS_0004	-	100.00	ID=CDS_0004;locus_tag=CDS_0004;RBS=AGGAG;conf=100.00;prodigalID=1_4;
rs13350	ProPr	gene	3760	5049	CDS_0005	-	99.99	ID=CDS_0005;locus_tag=CDS_0005;RBS=AGGAG;conf=99.99;prodigalID=1_5;
rs13350	ProPr	gene	5078	5770	CDS_0006	-	100.00	ID=CDS_0006;locus_tag=CDS_0006;RBS=AGGAG;conf=100.00;prodigalID=1_6;
rs13350	ProPr	gene	5785	6543	CDS_0007	-	100.00	ID=CDS_0007;locus_tag=CDS_0007;RBS=AGGAG;conf=100.00;prodigalID=1_7;
rs13350	ProPr	gene	6543	7004	CDS_0008	-	100.00	ID=CDS_0008;locus_tag=CDS_0008;RBS=AGGAG;conf=100.00;prodigalID=1_8;
rs13350	ProPr	gene	7026	7289	CDS_0009	-	99.99	ID=CDS_0009;locus_tag=CDS_0009;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_9;
rs13350	ProPr	gene	7393	8166	CDS_0010	-	100.00	ID=CDS_0010;locus_tag=CDS_0010;RBS=AGGA;conf=100.00;prodigalID=1_10;
rs13350	ProPr	gene	8258	8980	CDS_0011	-	100.00	ID=CDS_0011;locus_tag=CDS_0011;RBS=GGA/GAG/AGG;conf=100.00;prodigalID=1_11;
rs13350	ProPr	gene	9005	9877	CDS_0012	-	100.00	ID=CDS_0012;locus_tag=CDS_0012;RBS=None;conf=100.00;prodigalID=1_12;
rs13350	ProPr	gene	10168	11442	CDS_0013	-	99.99	ID=CDS_0013;locus_tag=CDS_0013;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_13;
rs13350	ProPr	gene	11726	12886	CDS_0014	-	99.99	ID=CDS_0014;locus_tag=CDS_0014;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_14;
rs13350	ProPr	promoter	1424	1495	0.99	-	.	ID=p_0001;locus_tag=p_0001;TSS=1424;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TATTGACTATTAGAATTAAAATGTGTTATTATGACATGAAATGCTTAAAAATGCTATCATAAAATATAATA
rs13350	ProPr	promoter	11615	11686	1.0	-	.	ID=p_0002;locus_tag=p_0002;TSS=11615;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=TTTGTTCAATTTAGATAGTTAGTTTGTGGCTAGACTTAAAAATATTTTTAAATATTGATAAAATTTAAAAA
rs13350	FACoP_TransTerm	TransTerm	11605	11621	24	+	.	ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0014;FACoPscore=24;TTseq=TAAAAA CTTAC TTTTTA AATTTTATC
rs13350	FACoP_TransTerm	TransTerm	11688	11715	62	-	.	ID=TTerm_0002;locus_tag=TTerm_0002;Upstream_gene=CDS_0014;FACoPscore=62;TTseq=TATAAAGAAGTC AATA GACTTCTTTTTA ATTTTGTTC
rs13350	FACoP	operon	28	1368	.	-	#37A397	ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001;
rs13350	FACoP	operon	1594	7289	.	-	#45CCBC	ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0002,CDS_0003,CDS_0004,CDS_0005,CDS_0006,CDS_0007,CDS_0008,CDS_0009;
rs13350	FACoP	operon	7393	8166	.	-	#37A397	ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0010;
rs13350	FACoP	operon	8258	9877	.	-	#45CCBC	ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0011,CDS_0012;
rs13350	FACoP	operon	10168	11442	.	-	#37A397	ID=operon_0005;locus_tag=operon_0005;Name=operon_0005;operon_members=CDS_0013;
rs13350	FACoP	operon	11726	12886	.	-	#45CCBC	ID=operon_0006;locus_tag=operon_0006;Name=operon_0006;operon_members=CDS_0014;
rs13350	ProPr	gene	28	1368	CDS_0001	-	99.99	ID=CDS_0001;locus_tag=CDS_0001;RBS=None;conf=99.99;prodigalID=1_1;
rs13350	ProPr	gene	1594	1794	CDS_0002	-	99.91	ID=CDS_0002;locus_tag=CDS_0002;RBS=AGGA;conf=99.91;prodigalID=1_2;
rs13350	ProPr	gene	1796	2728	CDS_0003	-	100.00	ID=CDS_0003;locus_tag=CDS_0003;RBS=AGGAG;conf=100.00;prodigalID=1_3;
rs13350	ProPr	gene	2773	3705	CDS_0004	-	100.00	ID=CDS_0004;locus_tag=CDS_0004;RBS=AGGAG;conf=100.00;prodigalID=1_4;
rs13350	ProPr	gene	3760	5049	CDS_0005	-	99.99	ID=CDS_0005;locus_tag=CDS_0005;RBS=AGGAG;conf=99.99;prodigalID=1_5;
rs13350	ProPr	gene	5078	5770	CDS_0006	-	100.00	ID=CDS_0006;locus_tag=CDS_0006;RBS=AGGAG;conf=100.00;prodigalID=1_6;
rs13350	ProPr	gene	5785	6543	CDS_0007	-	100.00	ID=CDS_0007;locus_tag=CDS_0007;RBS=AGGAG;conf=100.00;prodigalID=1_7;
rs13350	ProPr	gene	6543	7004	CDS_0008	-	100.00	ID=CDS_0008;locus_tag=CDS_0008;RBS=AGGAG;conf=100.00;prodigalID=1_8;
rs13350	ProPr	gene	7026	7289	CDS_0009	-	99.99	ID=CDS_0009;locus_tag=CDS_0009;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_9;
rs13350	ProPr	gene	7393	8166	CDS_0010	-	100.00	ID=CDS_0010;locus_tag=CDS_0010;RBS=AGGA;conf=100.00;prodigalID=1_10;
rs13350	ProPr	gene	8258	8980	CDS_0011	-	100.00	ID=CDS_0011;locus_tag=CDS_0011;RBS=GGA/GAG/AGG;conf=100.00;prodigalID=1_11;
rs13350	ProPr	gene	9005	9877	CDS_0012	-	100.00	ID=CDS_0012;locus_tag=CDS_0012;RBS=None;conf=100.00;prodigalID=1_12;
rs13350	ProPr	gene	10168	11442	CDS_0013	-	99.99	ID=CDS_0013;locus_tag=CDS_0013;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_13;
rs13350	ProPr	gene	11726	12886	CDS_0014	-	99.99	ID=CDS_0014;locus_tag=CDS_0014;RBS=GGA/GAG/AGG;conf=99.99;prodigalID=1_14;