rs13480 ProPr promoter 1088 1159 1.0 - . ID=p_0002;locus_tag=p_0002;TSS=1088;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=TATTTTTCATTGTATAATAGTAATCATTATTAAATCAATATATATAGAAATTAACTATTATATTATTATAA rs13480 ProPr promoter 1031 1102 1.0 + . ID=p_0001;locus_tag=p_0001;TSS=1102;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TTTTATAAAAATTTAAATTACAACATTTTCTTACATTTTATTATTTTTTTCTATTAATTATAATAATATAA rs13480 FACoP_TransTerm TransTerm 2800 2822 22 + . ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0002;FACoPscore=22;TTseq=AAAAATAA TATTGTT TTATTATT TTAAAACGA rs13480 FACoP_TransTerm TransTerm 4677 4724 34 + . ID=TTerm_0002;locus_tag=TTerm_0002;Upstream_gene=CDS_0004;FACoPscore=34;TTseq=ATATACACTGTTTTTATTTTT CGTTTA AAAAATACATATTTTGTATAT TATAACTTT rs13480 FACoP_TransTerm TransTerm 4677 4724 34 + . ID=TTerm_0003;locus_tag=TTerm_0003;Upstream_gene=CDS_0005;FACoPscore=34;TTseq=ATATACACTGTTTTTATTTTT CGTTTA AAAAATACATATTTTGTATAT TATAACTTT rs13480 FACoP_TransTerm TransTerm 2801 2824 36 - . ID=TTerm_0004;locus_tag=TTerm_0004;Upstream_gene=CDS_0002;FACoPscore=36;TTseq=AAAATAATA AAACAA TATTATTTT TTAGACATC rs13480 FACoP_TransTerm TransTerm 4701 4729 36 - . ID=TTerm_0005;locus_tag=TTerm_0005;Upstream_gene=CDS_0004;FACoPscore=36;TTseq=TTATAATATACA AAATA TGTATTTTTTAA AACGAAAAA rs13480 FACoP_TransTerm TransTerm 4701 4729 36 - . ID=TTerm_0006;locus_tag=TTerm_0006;Upstream_gene=CDS_0005;FACoPscore=36;TTseq=TTATAATATACA AAATA TGTATTTTTTAA AACGAAAAA rs13480 FACoP operon 1 978 . - #37A397 ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001; rs13480 FACoP operon 1197 2756 . + #45CCBC ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0002; rs13480 FACoP operon 2862 4636 . + #37A397 ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0003,CDS_0004; rs13480 FACoP operon 4851 5753 . - #45CCBC ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0005; ##gff-version 3 # Sequence Data: seqnum=1;seqlen=5753;seqhdr="rs13480 putative operon" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1 rs13480 Prodigal_v2.6.3 CDS 1 978 151.6 - 0 ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.306;conf=100.00;score=150.97;cscore=140.81;sscore=10.16;rscore=7.43;uscore=0.48;tscore=2.90; rs13480 Prodigal_v2.6.3 CDS 1197 2756 261.3 + 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.301;conf=99.99;score=261.28;cscore=255.20;sscore=6.08;rscore=1.45;uscore=1.74;tscore=2.90; rs13480 Prodigal_v2.6.3 CDS 2862 3821 130.9 + 0 ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277;conf=100.00;score=130.94;cscore=119.58;sscore=11.36;rscore=7.43;uscore=1.03;tscore=2.90; rs13480 Prodigal_v2.6.3 CDS 3824 4636 95.6 + 0 ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295;conf=100.00;score=96.88;cscore=90.35;sscore=6.53;rscore=7.43;uscore=2.33;tscore=-4.48; rs13480 Prodigal_v2.6.3 CDS 4851 5753 123.7 - 0 ID=1_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277;conf=100.00;score=123.69;cscore=120.47;sscore=3.22;rscore=0.00;uscore=0.00;tscore=3.22; chrom db type start end name strand score description CDS_0003 ProPr promoter 0 71.0 prom_0003 + 0.48 ID=p_0003;locus_tag=p_0003;TSS=71.0;class=intergenic;min10seq=TGTTTTATT;min10score=3;min10class=weak;promseq= CDS_0002 ProPr promoter 52 123.0 prom_0001 + 0.82 ID=p_0001;locus_tag=p_0001;TSS=123.0;class=intergenic;min10seq=AATTATAAT;min10score=5;min10class=strong;promseq=TTTTATAAAAATTTAAATTACAACATTTTCTTACATTTTATTATTTTTTTCTATTAATTATAATAATATAA CDS_0001 ProPr promoter 105 176.0 prom_0002 + 1.0 ID=p_0002;locus_tag=p_0002;TSS=176.0;class=intergenic;min10seq=TTTTATAAA;min10score=3;min10class=weak;promseq=TATTATAATTAATAGAAAAAAATAATAAAATGTAAGAAAATGTTGTAATTTAAATTTTTATAAAATACAAT rs13480 ProPr promoter 1025 1096 1.0 - . ID=p_0002;locus_tag=p_0002;TSS=1025;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=TATTATAATTAATAGAAAAAAATAATAAAATGTAAGAAAATGTTGTAATTTAAATTTTTATAAAATACAAT rs13480 ProPr promoter 1031 1102 0.82 + . ID=p_0001;locus_tag=p_0001;TSS=1102;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TTTTATAAAAATTTAAATTACAACATTTTCTTACATTTTATTATTTTTTTCTATTAATTATAATAATATAA rs13480 ProPr gene 1 978 CDS_0001 - 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=AGGAG;conf=100.00;prodigalID=1_1; rs13480 ProPr gene 1197 2756 CDS_0002 + 99.99 ID=CDS_0002;locus_tag=CDS_0002;RBS=AGGA/GGAG/GAGG;conf=99.99;prodigalID=1_2; rs13480 ProPr gene 2862 3821 CDS_0003 + 100.00 ID=CDS_0003;locus_tag=CDS_0003;RBS=AGGAG;conf=100.00;prodigalID=1_3; rs13480 ProPr gene 3824 4636 CDS_0004 + 100.00 ID=CDS_0004;locus_tag=CDS_0004;RBS=AGGAG;conf=100.00;prodigalID=1_4; rs13480 ProPr gene 4851 5753 CDS_0005 - 100.00 ID=CDS_0005;locus_tag=CDS_0005;RBS=None;conf=100.00;prodigalID=1_5; rs13480 ProPr promoter 1025 1096 1.0 - . ID=p_0002;locus_tag=p_0002;TSS=1025;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=TATTATAATTAATAGAAAAAAATAATAAAATGTAAGAAAATGTTGTAATTTAAATTTTTATAAAATACAAT rs13480 ProPr promoter 1031 1102 0.82 + . ID=p_0001;locus_tag=p_0001;TSS=1102;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=TTTTATAAAAATTTAAATTACAACATTTTCTTACATTTTATTATTTTTTTCTATTAATTATAATAATATAA rs13480 FACoP_TransTerm TransTerm 2800 2822 22 + . ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0002;FACoPscore=22;TTseq=AAAAATAA TATTGTT TTATTATT TTAAAACGA rs13480 FACoP_TransTerm TransTerm 4677 4724 34 + . ID=TTerm_0002;locus_tag=TTerm_0002;Upstream_gene=CDS_0004;FACoPscore=34;TTseq=ATATACACTGTTTTTATTTTT CGTTTA AAAAATACATATTTTGTATAT TATAACTTT rs13480 FACoP_TransTerm TransTerm 4677 4724 34 + . ID=TTerm_0003;locus_tag=TTerm_0003;Upstream_gene=CDS_0005;FACoPscore=34;TTseq=ATATACACTGTTTTTATTTTT CGTTTA AAAAATACATATTTTGTATAT TATAACTTT rs13480 FACoP_TransTerm TransTerm 2801 2824 36 - . ID=TTerm_0004;locus_tag=TTerm_0004;Upstream_gene=CDS_0002;FACoPscore=36;TTseq=AAAATAATA AAACAA TATTATTTT TTAGACATC rs13480 FACoP_TransTerm TransTerm 4701 4729 36 - . ID=TTerm_0005;locus_tag=TTerm_0005;Upstream_gene=CDS_0004;FACoPscore=36;TTseq=TTATAATATACA AAATA TGTATTTTTTAA AACGAAAAA rs13480 FACoP_TransTerm TransTerm 4701 4729 36 - . ID=TTerm_0006;locus_tag=TTerm_0006;Upstream_gene=CDS_0005;FACoPscore=36;TTseq=TTATAATATACA AAATA TGTATTTTTTAA AACGAAAAA rs13480 FACoP operon 1 978 . - #37A397 ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001; rs13480 FACoP operon 1197 2756 . + #45CCBC ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0002; rs13480 FACoP operon 2862 4636 . + #37A397 ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0003,CDS_0004; rs13480 FACoP operon 4851 5753 . - #45CCBC ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0005; rs13480 ProPr gene 1 978 CDS_0001 - 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=AGGAG;conf=100.00;prodigalID=1_1; rs13480 ProPr gene 1197 2756 CDS_0002 + 99.99 ID=CDS_0002;locus_tag=CDS_0002;RBS=AGGA/GGAG/GAGG;conf=99.99;prodigalID=1_2; rs13480 ProPr gene 2862 3821 CDS_0003 + 100.00 ID=CDS_0003;locus_tag=CDS_0003;RBS=AGGAG;conf=100.00;prodigalID=1_3; rs13480 ProPr gene 3824 4636 CDS_0004 + 100.00 ID=CDS_0004;locus_tag=CDS_0004;RBS=AGGAG;conf=100.00;prodigalID=1_4; rs13480 ProPr gene 4851 5753 CDS_0005 - 100.00 ID=CDS_0005;locus_tag=CDS_0005;RBS=None;conf=100.00;prodigalID=1_5;