rs14085 ProPr promoter 1061 1132 1.0 - . ID=p_0001;locus_tag=p_0001;TSS=1061;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=CTAATCAATGAAAAAGCTCTTTAAAAAGAGCTTTTTTATTGTCAAAAAATACAAAAAAGAAAAGGAATGAG rs14085 ProPr promoter 1849 1920 0.16 - . ID=p_0002;locus_tag=p_0002;TSS=1849;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=AATATAGAAATAAGTCAAAAATAAGATAGAAATAAGTTGAAATTAAGAATTAAAAAAATTTTTATTCCAAT rs14085 ProPr promoter 4179 4250 1.0 - . ID=p_0003;locus_tag=p_0003;TSS=4179;Downstream_locus_tag=p_0003;class=intergenic;promoterSeq=ATTTAAAAACCATGCCATAAAAGATTACAAAAAGTTTACAATTTGTAATTTTTTGTGCTATAATGAAAAAA rs14085 ProPr promoter 7598 7669 0.32 - . ID=p_0004;locus_tag=p_0004;TSS=7598;Downstream_locus_tag=p_0004;class=intergenic;promoterSeq=TCTTATTATTGATGAAAAATGTAATAATTTTAAACTGTAAAATAGTGTAAAGTTATTTTATAATATAAATA rs14085 ProPr promoter 10361 10432 0.98 - . ID=p_0007;locus_tag=p_0007;TSS=10361;Downstream_locus_tag=p_0007;class=intergenic;promoterSeq=ACATCTATTAATAAATCAATATATCTTAAAATATTATAAAAATAAAACTATAATATTCTATAATTAATATG rs14085 ProPr promoter 10283 10354 0.51 + . ID=p_0005;locus_tag=p_0005;TSS=10354;Downstream_locus_tag=p_0005;class=intergenic;promoterSeq=ATATGTATTTAATTTTTATTATATCAGATTTCTAAATTAAGGTCATATTTTATTTTGATAAAATATGGATT rs14085 ProPr promoter 10374 10445 1.0 + . ID=p_0006;locus_tag=p_0006;TSS=10445;Downstream_locus_tag=p_0006;class=intergenic;promoterSeq=GAATATTATAGTTTTATTTTTATAATATTTTAAGATATATTGATTTATTAATAGATGTGCTATACTAATGT rs14085 FACoP_TransTerm TransTerm 1084 1101 24 + . ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0002;FACoPscore=24;TTseq=TTTTTT GACAAT AAAAAA GCTCTTTTT rs14085 FACoP_TransTerm TransTerm 1985 2011 42 + . ID=TTerm_0002;locus_tag=TTerm_0002;Upstream_gene=CDS_0003;FACoPscore=42;TTseq=AAAATATATCA TCTCT TGTTATATTTT ACATTATAA rs14085 FACoP_TransTerm TransTerm 1985 2038 80 + . ID=TTerm_0003;locus_tag=TTerm_0003;Upstream_gene=CDS_0003;FACoPscore=80;TTseq=AAAATATATCATCTCTTGTTATA TTTTACAT TATAACAGGAGATGATATGTTTT GCTTTAATA rs14085 FACoP_TransTerm TransTerm 4153 4176 40 + . ID=TTerm_0004;locus_tag=TTerm_0004;Upstream_gene=CDS_0004;FACoPscore=40;TTseq=TTACATAA ATTCAATA TTATGTAA ATCTTTTTT rs14085 FACoP_TransTerm TransTerm 7613 7647 44 + . ID=TTerm_0005;locus_tag=TTerm_0005;Upstream_gene=CDS_0006;FACoPscore=44;TTseq=AATAACTTTACACT ATTTTAC AGTTTAAAATTATT ACATTTTTC rs14085 FACoP_TransTerm TransTerm 7749 7766 44 + . ID=TTerm_0006;locus_tag=TTerm_0006;Upstream_gene=CDS_0006;FACoPscore=44;TTseq=ATGAACT AAAA AGTTCAT TTTGAGACA rs14085 FACoP_TransTerm TransTerm 1985 2011 42 - . ID=TTerm_0007;locus_tag=TTerm_0007;Upstream_gene=CDS_0003;FACoPscore=42;TTseq=AAAATATAACA AGAGA TGATATATTTT TTGTAAAGA rs14085 FACoP_TransTerm TransTerm 1985 2038 80 - . ID=TTerm_0008;locus_tag=TTerm_0008;Upstream_gene=CDS_0003;FACoPscore=80;TTseq=AAAACATATCATCTCCTGTTATA ATGTAAAA TATAACAAGAGATGATATATTTT TTGTAAAGA rs14085 FACoP_TransTerm TransTerm 7613 7647 44 - . ID=TTerm_0009;locus_tag=TTerm_0009;Upstream_gene=CDS_0006;FACoPscore=44;TTseq=AATAATTTTAAACT GTAAAAT AGTGTAAAGTTATT TTTATAATA rs14085 FACoP operon 1 1056 . - #37A397 ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001; rs14085 FACoP operon 1151 1837 . - #45CCBC ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0002; rs14085 FACoP operon 2057 4081 . - #37A397 ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0003; rs14085 FACoP operon 4335 5852 . - #45CCBC ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0004; rs14085 FACoP operon 5986 7563 . - #37A397 ID=operon_0005;locus_tag=operon_0005;Name=operon_0005;operon_members=CDS_0005; rs14085 FACoP operon 7860 10271 . - #45CCBC ID=operon_0006;locus_tag=operon_0006;Name=operon_0006;operon_members=CDS_0006; rs14085 FACoP operon 10498 10893 . + #37A397 ID=operon_0007;locus_tag=operon_0007;Name=operon_0007;operon_members=CDS_0007; ##gff-version 3 # Sequence Data: seqnum=1;seqlen=10893;seqhdr="rs14085 putative operon" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="0|Mycoplasma_bovis_PG45|B|29.3|4|1";gc_cont=29.30;transl_table=4;uses_sd=1 rs14085 Prodigal_v2.6.3 CDS 1 1056 164.9 - 0 ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291;conf=100.00;score=164.89;cscore=147.97;sscore=16.92;rscore=8.70;uscore=4.28;tscore=3.94; rs14085 Prodigal_v2.6.3 CDS 1151 1837 103.9 - 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.335;conf=100.00;score=103.30;cscore=83.16;sscore=20.14;rscore=14.49;uscore=2.37;tscore=3.94; rs14085 Prodigal_v2.6.3 CDS 2057 4081 390.8 - 0 ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.313;conf=99.99;score=390.17;cscore=373.56;sscore=16.62;rscore=10.45;uscore=2.88;tscore=3.94; rs14085 Prodigal_v2.6.3 CDS 4335 5852 66.4 - 0 ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.300;conf=100.00;score=66.42;cscore=48.66;sscore=17.76;rscore=14.49;uscore=-0.67;tscore=3.94; rs14085 Prodigal_v2.6.3 CDS 5986 7563 287.5 - 0 ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.299;conf=99.99;score=286.86;cscore=269.77;sscore=17.09;rscore=10.45;uscore=3.35;tscore=3.94; rs14085 Prodigal_v2.6.3 CDS 7860 10271 392.6 - 0 ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330;conf=99.99;score=391.99;cscore=376.14;sscore=15.85;rscore=10.45;uscore=2.11;tscore=3.94; rs14085 Prodigal_v2.6.3 CDS 10498 10893 27.5 + 0 ID=1_7;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.220;conf=99.82;score=27.51;cscore=20.67;sscore=6.84;rscore=14.49;uscore=3.85;tscore=-11.49; chrom db type start end name strand score description CDS_0007 ProPr promoter 13.0 84.0 prom_0005 + 0.51 ID=p_0005;locus_tag=p_0005;TSS=84.0;class=intergenic;min10seq=TGATAAAAT;min10score=4;min10class=weak;promseq=ATATGTATTTAATTTTTATTATATCAGATTTCTAAATTAAGGTCATATTTTATTTTGATAAAATATGGATT CDS_0001 ProPr promoter 19.0 90.0 prom_0001 + 1.0 ID=p_0001;locus_tag=p_0001;TSS=90.0;class=intergenic;min10seq=TACAAAAAA;min10score=3;min10class=weak;promseq=CTAATCAATGAAAAAGCTCTTTAAAAAGAGCTTTTTTATTGTCAAAAAATACAAAAAAGAAAAGGAATGAG CDS_0006 ProPr promoter 66.0 137.0 prom_0007 + 0.98 ID=p_0007;locus_tag=p_0007;TSS=137.0;class=intergenic;min10seq=TTCTATAAT;min10score=4;min10class=weak;promseq=ACATCTATTAATAAATCAATATATCTTAAAATATTATAAAAATAAAACTATAATATTCTATAATTAATATG CDS_0003 ProPr promoter 80.0 151.0 prom_0003 + 1.0 ID=p_0003;locus_tag=p_0003;TSS=151.0;class=intergenic;min10seq=TGCTATAAT;min10score=5;min10class=strong;promseq=ATTTAAAAACCATGCCATAAAAGATTACAAAAAGTTTACAATTTGTAATTTTTTGTGCTATAATGAAAAAA CDS_0007 ProPr promoter 105.0 176.0 prom_0006 + 1.0 ID=p_0006;locus_tag=p_0006;TSS=176.0;class=intergenic;min10seq=TGTGCTATA;min10score=2;min10class=weak;promseq=GAATATTATAGTTTTATTTTTATAATATTTTAAGATATATTGATTTATTAATAGATGTGCTATACTAATGT CDS_0002 ProPr promoter 137.0 208.0 prom_0002 + 0.16 ID=p_0002;locus_tag=p_0002;TSS=208.0;class=intergenic;min10seq=TTAAAAAAA;min10score=3;min10class=weak;promseq=AATATAGAAATAAGTCAAAAATAAGATAGAAATAAGTTGAAATTAAGAATTAAAAAAATTTTTATTCCAAT CDS_0005 ProPr promoter 191.0 262.0 prom_0004 + 0.32 ID=p_0004;locus_tag=p_0004;TSS=262.0;class=intergenic;min10seq=TTTTATAAT;min10score=5;min10class=strong;promseq=TCTTATTATTGATGAAAAATGTAATAATTTTAAACTGTAAAATAGTGTAAAGTTATTTTATAATATAAATA rs14085 ProPr promoter 1061 1132 1.0 - . ID=p_0001;locus_tag=p_0001;TSS=1061;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=CTAATCAATGAAAAAGCTCTTTAAAAAGAGCTTTTTTATTGTCAAAAAATACAAAAAAGAAAAGGAATGAG rs14085 ProPr promoter 1849 1920 0.16 - . ID=p_0002;locus_tag=p_0002;TSS=1849;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=AATATAGAAATAAGTCAAAAATAAGATAGAAATAAGTTGAAATTAAGAATTAAAAAAATTTTTATTCCAAT rs14085 ProPr promoter 4179 4250 1.0 - . ID=p_0003;locus_tag=p_0003;TSS=4179;Downstream_locus_tag=p_0003;class=intergenic;promoterSeq=ATTTAAAAACCATGCCATAAAAGATTACAAAAAGTTTACAATTTGTAATTTTTTGTGCTATAATGAAAAAA rs14085 ProPr promoter 7598 7669 0.32 - . ID=p_0004;locus_tag=p_0004;TSS=7598;Downstream_locus_tag=p_0004;class=intergenic;promoterSeq=TCTTATTATTGATGAAAAATGTAATAATTTTAAACTGTAAAATAGTGTAAAGTTATTTTATAATATAAATA rs14085 ProPr promoter 10361 10432 0.98 - . ID=p_0007;locus_tag=p_0007;TSS=10361;Downstream_locus_tag=p_0007;class=intergenic;promoterSeq=ACATCTATTAATAAATCAATATATCTTAAAATATTATAAAAATAAAACTATAATATTCTATAATTAATATG rs14085 ProPr promoter 10283 10354 0.51 + . ID=p_0005;locus_tag=p_0005;TSS=10354;Downstream_locus_tag=p_0005;class=intergenic;promoterSeq=ATATGTATTTAATTTTTATTATATCAGATTTCTAAATTAAGGTCATATTTTATTTTGATAAAATATGGATT rs14085 ProPr promoter 10374 10445 1.0 + . ID=p_0006;locus_tag=p_0006;TSS=10445;Downstream_locus_tag=p_0006;class=intergenic;promoterSeq=GAATATTATAGTTTTATTTTTATAATATTTTAAGATATATTGATTTATTAATAGATGTGCTATACTAATGT rs14085 ProPr gene 1 1056 CDS_0001 - 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=AGGA;conf=100.00;prodigalID=1_1; rs14085 ProPr gene 1151 1837 CDS_0002 - 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGAGG;conf=100.00;prodigalID=1_2; rs14085 ProPr gene 2057 4081 CDS_0003 - 99.99 ID=CDS_0003;locus_tag=CDS_0003;RBS=AGxAGG/AGGxGG;conf=99.99;prodigalID=1_3; rs14085 ProPr gene 4335 5852 CDS_0004 - 100.00 ID=CDS_0004;locus_tag=CDS_0004;RBS=GGAGG;conf=100.00;prodigalID=1_4; rs14085 ProPr gene 5986 7563 CDS_0005 - 99.99 ID=CDS_0005;locus_tag=CDS_0005;RBS=AGxAGG/AGGxGG;conf=99.99;prodigalID=1_5; rs14085 ProPr gene 7860 10271 CDS_0006 - 99.99 ID=CDS_0006;locus_tag=CDS_0006;RBS=AGxAGG/AGGxGG;conf=99.99;prodigalID=1_6; rs14085 ProPr gene 10498 10893 CDS_0007 + 99.82 ID=CDS_0007;locus_tag=CDS_0007;RBS=GGAGG;conf=99.82;prodigalID=1_7; rs14085 ProPr promoter 1061 1132 1.0 - . ID=p_0001;locus_tag=p_0001;TSS=1061;Downstream_locus_tag=p_0001;class=intergenic;promoterSeq=CTAATCAATGAAAAAGCTCTTTAAAAAGAGCTTTTTTATTGTCAAAAAATACAAAAAAGAAAAGGAATGAG rs14085 ProPr promoter 1849 1920 0.16 - . ID=p_0002;locus_tag=p_0002;TSS=1849;Downstream_locus_tag=p_0002;class=intergenic;promoterSeq=AATATAGAAATAAGTCAAAAATAAGATAGAAATAAGTTGAAATTAAGAATTAAAAAAATTTTTATTCCAAT rs14085 ProPr promoter 4179 4250 1.0 - . ID=p_0003;locus_tag=p_0003;TSS=4179;Downstream_locus_tag=p_0003;class=intergenic;promoterSeq=ATTTAAAAACCATGCCATAAAAGATTACAAAAAGTTTACAATTTGTAATTTTTTGTGCTATAATGAAAAAA rs14085 ProPr promoter 7598 7669 0.32 - . ID=p_0004;locus_tag=p_0004;TSS=7598;Downstream_locus_tag=p_0004;class=intergenic;promoterSeq=TCTTATTATTGATGAAAAATGTAATAATTTTAAACTGTAAAATAGTGTAAAGTTATTTTATAATATAAATA rs14085 ProPr promoter 10361 10432 0.98 - . ID=p_0007;locus_tag=p_0007;TSS=10361;Downstream_locus_tag=p_0007;class=intergenic;promoterSeq=ACATCTATTAATAAATCAATATATCTTAAAATATTATAAAAATAAAACTATAATATTCTATAATTAATATG rs14085 ProPr promoter 10283 10354 0.51 + . ID=p_0005;locus_tag=p_0005;TSS=10354;Downstream_locus_tag=p_0005;class=intergenic;promoterSeq=ATATGTATTTAATTTTTATTATATCAGATTTCTAAATTAAGGTCATATTTTATTTTGATAAAATATGGATT rs14085 ProPr promoter 10374 10445 1.0 + . ID=p_0006;locus_tag=p_0006;TSS=10445;Downstream_locus_tag=p_0006;class=intergenic;promoterSeq=GAATATTATAGTTTTATTTTTATAATATTTTAAGATATATTGATTTATTAATAGATGTGCTATACTAATGT rs14085 FACoP_TransTerm TransTerm 1084 1101 24 + . ID=TTerm_0001;locus_tag=TTerm_0001;Upstream_gene=CDS_0002;FACoPscore=24;TTseq=TTTTTT GACAAT AAAAAA GCTCTTTTT rs14085 FACoP_TransTerm TransTerm 1985 2011 42 + . ID=TTerm_0002;locus_tag=TTerm_0002;Upstream_gene=CDS_0003;FACoPscore=42;TTseq=AAAATATATCA TCTCT TGTTATATTTT ACATTATAA rs14085 FACoP_TransTerm TransTerm 1985 2038 80 + . ID=TTerm_0003;locus_tag=TTerm_0003;Upstream_gene=CDS_0003;FACoPscore=80;TTseq=AAAATATATCATCTCTTGTTATA TTTTACAT TATAACAGGAGATGATATGTTTT GCTTTAATA rs14085 FACoP_TransTerm TransTerm 4153 4176 40 + . ID=TTerm_0004;locus_tag=TTerm_0004;Upstream_gene=CDS_0004;FACoPscore=40;TTseq=TTACATAA ATTCAATA TTATGTAA ATCTTTTTT rs14085 FACoP_TransTerm TransTerm 7613 7647 44 + . ID=TTerm_0005;locus_tag=TTerm_0005;Upstream_gene=CDS_0006;FACoPscore=44;TTseq=AATAACTTTACACT ATTTTAC AGTTTAAAATTATT ACATTTTTC rs14085 FACoP_TransTerm TransTerm 7749 7766 44 + . ID=TTerm_0006;locus_tag=TTerm_0006;Upstream_gene=CDS_0006;FACoPscore=44;TTseq=ATGAACT AAAA AGTTCAT TTTGAGACA rs14085 FACoP_TransTerm TransTerm 1985 2011 42 - . ID=TTerm_0007;locus_tag=TTerm_0007;Upstream_gene=CDS_0003;FACoPscore=42;TTseq=AAAATATAACA AGAGA TGATATATTTT TTGTAAAGA rs14085 FACoP_TransTerm TransTerm 1985 2038 80 - . ID=TTerm_0008;locus_tag=TTerm_0008;Upstream_gene=CDS_0003;FACoPscore=80;TTseq=AAAACATATCATCTCCTGTTATA ATGTAAAA TATAACAAGAGATGATATATTTT TTGTAAAGA rs14085 FACoP_TransTerm TransTerm 7613 7647 44 - . ID=TTerm_0009;locus_tag=TTerm_0009;Upstream_gene=CDS_0006;FACoPscore=44;TTseq=AATAATTTTAAACT GTAAAAT AGTGTAAAGTTATT TTTATAATA rs14085 FACoP operon 1 1056 . - #37A397 ID=operon_0001;locus_tag=operon_0001;Name=operon_0001;operon_members=CDS_0001; rs14085 FACoP operon 1151 1837 . - #45CCBC ID=operon_0002;locus_tag=operon_0002;Name=operon_0002;operon_members=CDS_0002; rs14085 FACoP operon 2057 4081 . - #37A397 ID=operon_0003;locus_tag=operon_0003;Name=operon_0003;operon_members=CDS_0003; rs14085 FACoP operon 4335 5852 . - #45CCBC ID=operon_0004;locus_tag=operon_0004;Name=operon_0004;operon_members=CDS_0004; rs14085 FACoP operon 5986 7563 . - #37A397 ID=operon_0005;locus_tag=operon_0005;Name=operon_0005;operon_members=CDS_0005; rs14085 FACoP operon 7860 10271 . - #45CCBC ID=operon_0006;locus_tag=operon_0006;Name=operon_0006;operon_members=CDS_0006; rs14085 FACoP operon 10498 10893 . + #37A397 ID=operon_0007;locus_tag=operon_0007;Name=operon_0007;operon_members=CDS_0007; rs14085 ProPr gene 1 1056 CDS_0001 - 100.00 ID=CDS_0001;locus_tag=CDS_0001;RBS=AGGA;conf=100.00;prodigalID=1_1; rs14085 ProPr gene 1151 1837 CDS_0002 - 100.00 ID=CDS_0002;locus_tag=CDS_0002;RBS=GGAGG;conf=100.00;prodigalID=1_2; rs14085 ProPr gene 2057 4081 CDS_0003 - 99.99 ID=CDS_0003;locus_tag=CDS_0003;RBS=AGxAGG/AGGxGG;conf=99.99;prodigalID=1_3; rs14085 ProPr gene 4335 5852 CDS_0004 - 100.00 ID=CDS_0004;locus_tag=CDS_0004;RBS=GGAGG;conf=100.00;prodigalID=1_4; rs14085 ProPr gene 5986 7563 CDS_0005 - 99.99 ID=CDS_0005;locus_tag=CDS_0005;RBS=AGxAGG/AGGxGG;conf=99.99;prodigalID=1_5; rs14085 ProPr gene 7860 10271 CDS_0006 - 99.99 ID=CDS_0006;locus_tag=CDS_0006;RBS=AGxAGG/AGGxGG;conf=99.99;prodigalID=1_6; rs14085 ProPr gene 10498 10893 CDS_0007 + 99.82 ID=CDS_0007;locus_tag=CDS_0007;RBS=GGAGG;conf=99.82;prodigalID=1_7;