##gff-version  3
# Sequence Data: seqnum=1;seqlen=45112;seqhdr="PHICDKH01 - reassembled and mapped  (45,112 bp)    Accession: MN718463"
# Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1
PHICDKH01	Prodigal_v2.6.3	CDS	211	1341	138.0	-	0	ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.294;conf=100.00;score=137.33;cscore=126.49;sscore=10.84;rscore=5.66;uscore=2.93;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	1582	2088	51.9	-	0	ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.268;conf=100.00;score=51.90;cscore=46.36;sscore=5.54;rscore=2.72;uscore=-0.07;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	2192	2614	59.6	-	0	ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.258;conf=100.00;score=58.97;cscore=48.27;sscore=10.70;rscore=5.83;uscore=2.63;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	2678	2899	39.3	+	0	ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.297;conf=99.99;score=39.35;cscore=28.64;sscore=10.71;rscore=4.96;uscore=3.21;tscore=2.54;
PHICDKH01	Prodigal_v2.6.3	CDS	2913	3329	51.2	-	0	ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.218;conf=100.00;score=52.42;cscore=38.05;sscore=14.37;rscore=7.43;uscore=2.86;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	3338	3883	92.2	-	0	ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260;conf=100.00;score=91.54;cscore=80.19;sscore=11.36;rscore=5.83;uscore=3.28;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	4064	4279	28.2	+	0	ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278;conf=99.85;score=28.23;cscore=19.57;sscore=8.66;rscore=4.82;uscore=1.37;tscore=2.47;
PHICDKH01	Prodigal_v2.6.3	CDS	4310	5128	126.9	+	0	ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284;conf=100.00;score=127.83;cscore=115.03;sscore=12.80;rscore=7.43;uscore=1.52;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	5326	5493	19.1	-	0	ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.250;conf=98.60;score=18.49;cscore=18.21;sscore=0.29;rscore=0.96;uscore=-1.93;tscore=1.91;
PHICDKH01	Prodigal_v2.6.3	CDS	5616	5792	13.8	+	0	ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.311;conf=95.99;score=13.81;cscore=14.38;sscore=-0.57;rscore=3.95;uscore=1.93;tscore=-6.44;
PHICDKH01	Prodigal_v2.6.3	CDS	5785	6588	123.3	+	0	ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.285;conf=100.00;score=124.60;cscore=112.54;sscore=12.06;rscore=7.43;uscore=0.48;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	6636	6818	27.1	+	0	ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.262;conf=99.84;score=27.89;cscore=18.25;sscore=9.64;rscore=4.07;uscore=2.72;tscore=2.09;
PHICDKH01	Prodigal_v2.6.3	CDS	6776	7012	28.2	-	0	ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.236;conf=99.82;score=27.60;cscore=19.24;sscore=8.36;rscore=5.46;uscore=0.84;tscore=2.71;
PHICDKH01	Prodigal_v2.6.3	CDS	7122	7574	66.9	+	0	ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.285;conf=100.00;score=66.89;cscore=59.68;sscore=7.21;rscore=1.45;uscore=2.86;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	7555	7704	11.3	+	0	ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.240;conf=93.02;score=11.26;cscore=12.13;sscore=-0.87;rscore=1.60;uscore=-4.17;tscore=1.70;
PHICDKH01	Prodigal_v2.6.3	CDS	7871	8113	54.4	+	0	ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.313;conf=100.00;score=54.37;cscore=42.63;sscore=11.74;rscore=5.43;uscore=3.52;tscore=2.78;
PHICDKH01	Prodigal_v2.6.3	CDS	8192	8473	47.6	+	0	ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.262;conf=100.00;score=47.61;cscore=38.88;sscore=8.73;rscore=2.72;uscore=3.11;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	8460	9098	87.6	+	0	ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.280;conf=100.00;score=88.79;cscore=78.30;sscore=10.48;rscore=5.66;uscore=0.74;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	9117	10007	121.0	+	0	ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.270;conf=100.00;score=122.05;cscore=119.41;sscore=2.64;rscore=-0.99;uscore=-0.35;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	10027	10446	67.4	+	0	ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.321;conf=100.00;score=68.51;cscore=55.89;sscore=12.62;rscore=5.66;uscore=3.00;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	10476	10838	43.2	+	0	ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306;conf=100.00;score=44.18;cscore=31.32;sscore=12.85;rscore=5.66;uscore=3.34;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	10838	10972	18.9	+	0	ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311;conf=99.05;score=20.20;cscore=13.18;sscore=7.03;rscore=3.92;uscore=0.29;tscore=1.53;
PHICDKH01	Prodigal_v2.6.3	CDS	11251	11448	20.6	+	0	ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.278;conf=98.99;score=19.94;cscore=15.13;sscore=4.80;rscore=2.12;uscore=1.07;tscore=2.26;
PHICDKH01	Prodigal_v2.6.3	CDS	11475	11891	43.5	+	0	ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273;conf=100.00;score=44.44;cscore=46.99;sscore=-2.55;rscore=5.83;uscore=0.23;tscore=-9.61;
PHICDKH01	Prodigal_v2.6.3	CDS	11910	12410	66.8	+	0	ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.275;conf=100.00;score=67.92;cscore=52.85;sscore=15.07;rscore=7.43;uscore=3.67;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	12692	12805	5.6	+	0	ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.219;conf=75.53;score=4.90;cscore=5.85;sscore=-0.95;rscore=-2.22;uscore=0.64;tscore=1.29;
PHICDKH01	Prodigal_v2.6.3	CDS	12820	12996	22.1	+	0	ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.282;conf=99.52;score=23.18;cscore=15.38;sscore=7.80;rscore=3.94;uscore=0.73;tscore=2.02;
PHICDKH01	Prodigal_v2.6.3	CDS	13422	13862	73.4	+	0	ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290;conf=100.00;score=72.76;cscore=62.97;sscore=9.79;rscore=5.66;uscore=1.89;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	13852	15117	178.4	+	0	ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.295;conf=99.99;score=179.66;cscore=172.36;sscore=7.30;rscore=2.72;uscore=0.47;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	15086	16612	265.9	+	0	ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292;conf=99.99;score=265.88;cscore=264.99;sscore=0.89;rscore=-0.99;uscore=-1.02;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	16612	18030	216.1	+	0	ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273;conf=99.99;score=218.39;cscore=211.74;sscore=6.65;rscore=-0.99;uscore=2.47;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	18023	18199	29.8	+	0	ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277;conf=99.92;score=31.10;cscore=22.84;sscore=8.25;rscore=3.94;uscore=1.05;tscore=2.02;
PHICDKH01	Prodigal_v2.6.3	CDS	18231	18470	29.2	+	0	ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275;conf=99.90;score=30.12;cscore=26.41;sscore=3.71;rscore=-1.04;uscore=1.07;tscore=2.75;
PHICDKH01	Prodigal_v2.6.3	CDS	18471	18686	34.9	+	0	ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.306;conf=99.98;score=36.17;cscore=26.28;sscore=9.90;rscore=4.97;uscore=1.18;tscore=2.47;
PHICDKH01	Prodigal_v2.6.3	CDS	18716	18892	24.8	+	0	ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333;conf=99.73;score=25.71;cscore=16.72;sscore=8.98;rscore=5.17;uscore=0.84;tscore=2.02;
PHICDKH01	Prodigal_v2.6.3	CDS	19028	19663	115.9	+	0	ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.274;conf=100.00;score=115.91;cscore=105.78;sscore=10.13;rscore=7.43;uscore=-0.20;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	19681	20649	178.3	+	0	ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333;conf=99.99;score=179.43;cscore=172.33;sscore=7.11;rscore=2.72;uscore=0.40;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	20675	20929	33.5	+	0	ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.255;conf=99.96;score=34.46;cscore=26.37;sscore=8.09;rscore=2.72;uscore=1.48;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	20920	21288	54.0	+	0	ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.287;conf=100.00;score=55.25;cscore=47.44;sscore=7.82;rscore=2.72;uscore=0.97;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	21290	21724	62.4	+	0	ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.356;conf=100.00;score=63.68;cscore=57.33;sscore=6.35;rscore=2.72;uscore=-0.53;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	21732	22076	44.3	+	0	ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.243;conf=100.00;score=45.54;cscore=40.69;sscore=4.85;rscore=2.72;uscore=-1.96;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	22082	22888	152.4	+	0	ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311;conf=100.00;score=153.62;cscore=137.89;sscore=15.73;rscore=7.43;uscore=4.19;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	22947	23423	84.6	+	0	ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319;conf=100.00;score=84.60;cscore=78.99;sscore=5.60;rscore=2.72;uscore=-0.01;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	23416	23613	21.9	+	0	ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.237;conf=99.51;score=23.11;cscore=22.46;sscore=0.65;rscore=-1.27;uscore=-1.59;tscore=2.26;
PHICDKH01	Prodigal_v2.6.3	CDS	24352	24885	84.3	+	0	ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.316;conf=100.00;score=83.60;cscore=71.13;sscore=12.47;rscore=5.66;uscore=4.57;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	24991	30519	1011.3	+	0	ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318;conf=99.99;score=1011.31;cscore=998.84;sscore=12.46;rscore=7.43;uscore=2.14;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	30647	30796	5.6	+	0	ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287;conf=78.31;score=5.59;cscore=-0.37;sscore=5.95;rscore=4.37;uscore=0.38;tscore=1.70;
PHICDKH01	Prodigal_v2.6.3	CDS	30957	31712	103.5	+	0	ID=1_48;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.275;conf=100.00;score=103.49;cscore=106.02;sscore=-2.53;rscore=7.43;uscore=-0.35;tscore=-9.61;
PHICDKH01	Prodigal_v2.6.3	CDS	31714	34473	436.5	+	0	ID=1_49;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287;conf=99.99;score=437.73;cscore=448.08;sscore=-10.35;rscore=-0.99;uscore=-1.02;tscore=-9.61;
PHICDKH01	Prodigal_v2.6.3	CDS	34460	34765	51.5	+	0	ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.294;conf=100.00;score=52.64;cscore=40.11;sscore=12.52;rscore=7.43;uscore=1.01;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	34822	37002	427.4	+	0	ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.273;conf=99.99;score=428.09;cscore=424.74;sscore=3.35;rscore=-0.99;uscore=0.78;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	37002	39296	323.9	+	0	ID=1_52;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341;conf=99.99;score=325.14;cscore=323.60;sscore=1.54;rscore=2.72;uscore=2.02;tscore=-4.48;
PHICDKH01	Prodigal_v2.6.3	CDS	39331	41664	324.2	+	0	ID=1_53;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.256;conf=99.99;score=325.14;cscore=327.40;sscore=-2.26;rscore=2.72;uscore=3.73;tscore=-9.61;
PHICDKH01	Prodigal_v2.6.3	CDS	41679	42005	59.4	+	0	ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.248;conf=100.00;score=60.56;cscore=49.47;sscore=11.08;rscore=5.83;uscore=1.23;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	42031	42183	21.9	+	0	ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.209;conf=99.49;score=22.94;cscore=15.19;sscore=7.74;rscore=3.40;uscore=1.61;tscore=1.74;
PHICDKH01	Prodigal_v2.6.3	CDS	42247	42513	51.3	+	0	ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292;conf=100.00;score=51.31;cscore=40.73;sscore=10.58;rscore=7.43;uscore=0.26;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	42510	43319	131.0	+	0	ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314;conf=100.00;score=132.81;cscore=125.90;sscore=6.91;rscore=2.72;uscore=-0.48;tscore=2.90;
PHICDKH01	Prodigal_v2.6.3	CDS	43364	43540	31.5	-	0	ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.254;conf=99.95;score=32.81;cscore=22.97;sscore=9.84;rscore=4.06;uscore=2.49;tscore=2.02;
PHICDKH01	Prodigal_v2.6.3	CDS	43541	43708	4.7	-	0	ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.214;conf=71.72;score=4.05;cscore=3.52;sscore=0.52;rscore=-1.50;uscore=0.76;tscore=1.91;
PHICDKH01	Prodigal_v2.6.3	CDS	43978	44160	0.3	-	0	ID=1_60;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.186;conf=51.97;score=0.34;cscore=-1.64;sscore=1.98;rscore=-1.37;uscore=1.77;tscore=2.09;
PHICDKH01	Prodigal_v2.6.3	CDS	44237	44422	15.1	-	0	ID=1_61;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.312;conf=98.81;score=19.21;cscore=15.48;sscore=3.73;rscore=0.31;uscore=-2.86;tscore=2.12;
PHICDKH01	Prodigal_v2.6.3	CDS	44419	44574	4.6	-	0	ID=1_62;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.199;conf=74.03;score=4.56;cscore=2.64;sscore=1.92;rscore=-1.61;uscore=1.76;tscore=1.77;