chrom ID TSS locus_tag min10seq min10score strand score class promoterSeq locus_tag_intergenic startIntergenic endIntergenic brie28-concat.gff p_0001 3083 p_0001 TGTTATAAT 5 + 1.0 intergenic TACTTCTCTTTTTCTGATTCTCAAAAGGGAAGTTGCCTATTTTTAACAATTTTTGTGTTATAATTAACTAA CDS_0004 2898 3111 brie28-concat.gff p_0002 8515 p_0002 TAAAAAAAA 3 + 1.0 intergenic ACTAGTGTCGATCCTCTTATTTTTGTGTTTGAAAATGCTTTAGTCACCCATTTTCTAAAAAAAATGCTATC CDS_0007 8367 8553 brie28-concat.gff p_0003 15773 p_0003 TGATAAAAT 4 + 0.99 intergenic AGCATCCAAATAATTCAAGATTATGATGTTCTTATCTCAACTCCGAGTATGTTTATGATAAAATCTAATTG CDS_0015 15518 15878 brie28-concat.gff p_0004 25523 p_0004 TAGTATTTT 3 + 0.24 intergenic GTAATAAAGTTTGCGCCATTTTTTGATACAATTAAGGAGTCTTATCGAAAAGGAGTAGTATTTTATATTA CDS_0021 25437 25522 brie28-concat.gff p_0005 27091 p_0005 AAAAATTCT 2 + 1.0 intergenic TATTTTATGTAAATAATATATTTAGCCTGAGAAAATAATGGTGTTTGAAAAAAATTCTAGACTAAGGGGAA CDS_0022 26979 27193 brie28-concat.gff p_0006 32816 p_0006 TTTTCTATA 2 + 1.0 intergenic TTGGAGTGAGATAAAAAGCTAAAAGTTACATTGATTTAGCACTATCTCACTCCTTTTTTCTATACTTTTTT CDS_0027 32666 32951 brie28-concat.gff p_0007 42351 p_0007 CTATACTAA 2 + 1.0 intergenic ATCTAAGTAATTGGATGTTTTTAAGATGCCTTAAGCTTTCTTTAAGCTATCCAAGCTATACTAAGGTCATC CDS_0033 42267 42549 brie28-concat.gff p_0008 44596 p_0008 TAGACTATA 2 + 1.0 intergenic CAGTTTTTCAGGAAAATGAAGATGATTTTTGAATTTAAGTCTCTCTTAAGCTATTTAGACTATACTATCAT CDS_0036 44502 44810 brie28-concat.gff p_0009 44719 p_0009 TGTTATAAT 5 + 1.0 intergenic TGGTCGCCTTTTTTATGTTCAAATTTGGCTACACACCCATATCTCCGAACAAATATGTTATAATAGTTACA CDS_0036 44502 44810 brie28-concat.gff p_0010 49020 p_0010 TGTATGCTA 2 + 0.75 intergenic CTCATCGTTAATGCATTTGTTGAAAAAGATAAGACAGTAGCAGTCGTTTAAGTCTTGTATGCTAGTGGCAA CDS_0040 48932 49447 brie28-concat.gff p_0011 49295 p_0011 TAGAATAAA 3 + 0.9 intergenic TAAAAAGAAGCGGACATAGGATTCGATTAAGATGAGCTAAACGTCCAATCTTTGATAGAATAAAATAAACA CDS_0040 48932 49447 brie28-concat.gff p_0013 53335 p_0013 TAAAATAAT 3 - 1.0 intergenic TATTTTTTCATGGAATACTTCTTAAAAGATACTTTCTTGTCTCTACCCTATTAACTAAAATAATGGTAAAA CDS_0041 53300 53458 brie28-concat.gff p_0012 53431 p_0012 TGTTATAAT 5 + 1.0 intergenic GTAGAGACAAGAAAGTATCTTTTAAGAAGTATTCCATGAAAAAATACAAAAATTTTGTTATAATATGCAAG CDS_0042 53300 53458 brie28-concat.gff p_0014 57875 p_0014 ATACTTAAT 2 + 0.8 intergenic GTCTATGTGGTTCTATATGGTGTTTAAGTGGTTGAAAATATTCTAGAAAACCCCTATACTTAATGAAAACG CDS_0047 57670 57894 brie28-concat.gff p_0015 60646 p_0015 AGTTTTGTA 2 + 0.98 intergenic TGGATTTTTTGTTACAATAGTACAGCAGTGATTGAGATTAGTAAAAAACAAGGTAAGTTTTGTAGGTTTAA CDS_0050 60545 60697 brie28-concat.gff p_0016 64477 p_0016 TGAGCAATA 2 + 0.99 intergenic GTGTCAAAGAGCCCAAAAGGTTCTTTTCTTTTTGATTTGAATTAAGAAGAAAACATGAGCAATACAAGTTA CDS_0055 64406 64583 brie28-concat.gff p_0017 76520 p_0017 TGGTATACT 2 + 1.0 intergenic TCTGTATGTGATGATAAAAAGCCAAAGCTGATAGAAAACTTTTTTCTTCGTCTTATGGTATACTGATAGAA CDS_0058 76381 76545 brie28-concat.gff p_0018 78130 p_0018 TTAGAAAAA 3 + 1.0 intergenic GGTTAGATATCTCAGAATTCTCTTTTTCTTATTTTTTCATTTTTATATACCACTTTTAGAAAAACTGTGGT CDS_0060 78036 78239 brie28-concat.gff p_0019 80077 p_0019 AAGATAAAT 3 - 0.87 intergenic AGGGTCAAAATCAAGTTCAGAAAAACAAGCTTTGCACTTTTCTTATGATTTGGCAAAGATAAATACAATTT CDS_0063 80052 80179 brie28-concat.gff p_0021 80466 p_0021 TTAATAATA 3 - 0.67 intergenic ATTTTATTACCTATTCTTATTTTTTTGCTTTTGCCACTTATTTAATAAGCAACCCTTAATAATAAACTTTA CDS_0064 80451 80669 brie28-concat.gff p_0020 80577 p_0020 TGCTAAAAT 3 - 0.99 intergenic AATTAAAGTATTTTCATTTGCAGATTTGCAAATAAACCGATTTCATCAATCCCTCTGCTAAAATGGGGTTA CDS_0064 80451 80669 brie28-concat.gff p_0025 81646 p_0025 GGGATTTAT 2 - 1.0 intergenic GTAGTTTTCTTAAATTCTGAACTTATCTTACCGATTCTATTTCCTTATAAAATACGGGATTTATGCTACAA CDS_0066 81621 82144 brie28-concat.gff p_0022 81756 p_0022 TAGAATATT 3 + 1.0 intergenic GGTAAGATAAGTTCAGAATTTAAGAAAACTACTTGACGCCATTTAGATTTTAAGGTAGAATATTATTAGTT CDS_0067 81621 82144 brie28-concat.gff p_0024 81909 p_0024 ATCATAAAA 3 - 0.92 intergenic ACCTTAAAAAAGCTTTTCTTTAAAGTATTTTGGCAAAGATTTTTGCATACTTCCTATCATAAAATATCTGC CDS_0066 81621 82144 brie28-concat.gff p_0023 82025 p_0023 ATGGTAAAA 2 + 1.0 intergenic ACTTTAAAGAAAAGCTTTTTTAAGGTCGCATTTGACTTGTCAAAATGGGGCTTTTATGGTAAAATATGATA CDS_0067 81621 82144 brie28-concat.gff p_0028 84760 p_0028 ATATAAGAT 2 - 1.0 intergenic TAGCACATGGGAAACTATACTCTCGAAAAGCTTTTTAAAGTTGTCATTAGAGAACATATAAGATACAATAG CDS_0069 84643 84887 brie28-concat.gff p_0026 84772 p_0026 TTATCTATT 2 + 0.2 intergenic TCGTGGTGTTCAGGATATTTCAGTAAAAAAATTGAGAAACCTACTATTTTTAGTCTTATCTATTGTATCTT CDS_0070 84643 84887 brie28-concat.gff p_0027 84854 p_0027 TGGTATAAT 5 + 1.0 intergenic AATGACAACTTTAAAAAGCTTTTCGAGAGTATAGTTTCCCATGTGCTAACATTTTTGGTATAATAATAGTC CDS_0070 84643 84887 brie28-concat.gff p_0029 89252 p_0029 TGGTATAAT 5 - 1.0 intergenic AATACAAAACTATCTTTTAATATCAAAAGATAGTTTTTATTTGCTTTGAAAATCGTGGTATAATCGTAAAA CDS_0073 89153 89323 brie28-concat.gff p_0031 90592 p_0031 TGATATAAT 5 - 1.0 intergenic TCGGCATAAGTTGCGCTCCAAGCTTTTCTCGATTTCAGATATTTAAGTGGTTTTGTGATATAATAAACACT CDS_0074 90570 90779 brie28-concat.gff p_0030 90704 p_0030 TGGTAAAAT 3 + 0.99 intergenic GAGAAAAGCTTGGAGCGCAACTTATGCCGAAGCTCTGCCATTTTCGACTATAATATGGTAAAATGGAAGTT CDS_0075 90570 90779 brie28-concat.gff p_0032 94727 p_0032 TGTGAAAAA 1 + 0.94 intergenic TGTGAAAAAATTGTTCAAAAGTAATCCTTTTTTGGTCTTTTATTTTATATAGTTGGGAGCTTTGTTTCTGC CDS_0079 94647 94858 brie28-concat.gff p_0033 96735 p_0033 AAGATAAAA 3 + 0.96 intergenic AAAAATCAATATTGTTTGAGAATCAAAGTAATTCAGTGTTTTAACAATAAAAAATAAGATAAAACTGATAT CDS_0081 96595 96878 brie28-concat.gff p_0034 96851 p_0034 GTCTATAAT 4 + 1.0 intergenic AATCTCGATACTATAACGTTTTTTAATAAAACTCTTTTAACAGAAAGTTAAAGAAGTCTATAATGTTAGTA CDS_0081 96595 96878 brie28-concat.gff p_0035 97659 p_0035 TGATAGAAT 2 + 0.84 intergenic TAGCGGAAATTACATTTATTTAATACGCTTTGCCCTCGTAAGAGTGCTTTTTTTATGATAGAATGGGCATA CDS_0083 97297 97659 brie28-concat.gff p_0036 101792 p_0036 TGATATTAT 3 + 1.0 intergenic TCGCTAAAAAACTTAGAAAAGATGGTAGGTAAGTGTTGCCTTGGACTTGTTTTTTTGATATTATGTTAAAC CDS_0089 101694 101903 brie28-concat.gff p_0038 104664 p_0038 ACGAATAAA 3 - 1.0 intergenic ATTCATTTTGAATTATATATTCTTTTTGAATTCTTGTCAACTATTTTTATTCAAAACGAATAAAATATGAT CDS_0092 104641 104788 brie28-concat.gff p_0037 104731 p_0037 ATATATAAT 5 + 1.0 intergenic TTATATCATATTTTATTCGTTTTGAATAAAAATAGTTGACAAGAATTCAAAAAGAATATATAATTCAAAAT CDS_0093 104641 104788 brie28-concat.gff p_0039 107014 p_0039 TGGTTATCT 2 + 0.95 intergenic AGTAAATGAAACCGCAGGAATTTATCCGCGGTTTTCTTGTGTTCTTCTGAAAAAATGGTTATCTGACAATG CDS_0098 106940 107257 brie28-concat.gff p_0040 107233 p_0040 TGGTATAAT 5 + 1.0 intergenic ACTTGGGGCAAAGTCCCAAACCCCTTGAGGAAACGTGTAAGAAACAGGGGAAAAATGGTATAATAGAAGCA CDS_0098 106940 107257 brie28-concat.gff p_0041 115043 p_0041 TAAAAATAT 3 + 1.0 intergenic TTATTATTTCTTCTAGACATAAGAAGAGAAAACTTTACAGTTGACATTTTAAAAATATCAAAGGCATTATA CDS_0103 114969 115134 brie28-concat.gff p_0042 121016 p_0042 TTAGTATTA 2 + 1.0 intergenic ACTCCGAAACAAAAAGAATGAATTTTCTAAAAATTATTGACAAATAAATTTGCTTTTAGTATTATAAACAC CDS_0107 120792 121042 brie28-concat.gff p_0043 121259 p_0043 TGCGTTAAT 2 + 0.95 intergenic CTTTTTTTACAAGAGAATTATGTTTAAGATAAAAGATAATTACATTTATAGGTAATGCGTTAATGATTCAA CDS_0108 121146 121325 brie28-concat.gff p_0044 129290 p_0044 AGTATTTTA 3 - 1.0 intergenic AGTTTTTTTCAACAAAATAATAAATAAGAAGAATTAATCTTTTTAACAGCAGGAGAGTATTTTACTCTTCT CDS_0115 129263 129461 brie28-concat.gff p_0046 130789 p_0046 CTATTATTA 3 - 0.65 intergenic TGGATTTCATTTGACAACAGGAACCCTTGAAACTGTTTTGTCAGCTAAACCAAGGCTATTATTAGCCTTGG CDS_0118 130661 130931 brie28-concat.gff p_0045 130900 p_0045 TGTGCTATA 2 + 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_0119 130661 130931 brie28-concat.gff p_0047 132673 p_0047 AATAATTTT 3 - 0.95 intergenic TCTTTATTTAAAACTTTGCAACAGAACCGCATTTGACTCTAATCCAGAAAATGCCAATAATTTTAACGATG CDS_0120 132500 132965 brie28-concat.gff p_0049 133472 p_0049 TAGAATAAT 3 - 1.0 intergenic AATAAACGGTTACATCGGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAAA CDS_0121 133459 133609 brie28-concat.gff p_0048 133588 p_0048 TTTTTGTTA 2 + 0.94 intergenic CAACAGAACCGATGTAACCGTTTATTAATCTTTTTTATCATCTATGGATAACATTTTTTTGTTACACTAGG CDS_0122 133459 133609 brie28-concat.gff p_0050 135100 p_0050 TATTAAAAA 3 + 1.0 intergenic TAAATGTTGTAGAAACATTCGTTTTTTTCAATAAAAAAGGTGTAATTTCTATTAAAAATAGCGTTTTTAAT CDS_0125 134825 135146 brie28-concat.gff p_0051 136859 p_0051 TGCTATAAT 5 + 0.99 intergenic GGATTGGTAAGGCATTTTCTGATGATTTCGCTAGCTAGATAGTCAGGTGGATTTGTGCTATAATGAGTTCA CDS_0127 136767 136884 brie28-concat.gff p_0052 139092 p_0052 GTGTATAAT 4 + 1.0 intergenic AAAAAGAGTGCTAATTTTTTTGTTTTTTTTTTGGGGTTGACATGTTTAAGTTTAGGTGTATAATAGAATCA CDS_0130 138953 139146 brie28-concat.gff p_0053 140893 p_0053 AAGAAAAAA 3 + 1.0 intergenic TGAGAGAAAAGATAAGAGGCAAGCCGAAGGTTTGCAAAAAGAAATATCAGAAAAGAAGAAAAAAGCTTAGA CDS_0132 140793 140922 brie28-concat.gff p_0055 162655 p_0055 TACTTTAAT 3 + 1.0 intergenic TGAAAAGGGTGTACACTTTAATGAAAAGGGTGTATACTTTAATGAAAAGGGTGTATACTTTAATACGTAAG CDS_0142 162576 162679 brie28-concat.gff p_0057 166817 p_0057 CAAGAAAAA 2 - 1.0 intergenic TTTACCATATTTCAAAGCCTTTTAAAAGTTTTTTTCTCCAATTTAATAACAAGAAAAACGTTATAGACTGT CDS_0145 166786 166927 brie28-concat.gff p_0056 166873 p_0056 AGAAAAAAA 3 + 1.0 intergenic AATTTGTAAAAAGAAACAGTCTATAACGTTTTTCTTGTTATTAAATTGGAGAAAAAAACTTTTAAAAGGCT CDS_0146 166786 166927 brie28-concat.gff p_0058 168300 p_0058 CGTAAAATA 3 + 1.0 intergenic CTGTTGAGACTTGATTTTTTATTCTATAAATACTTTGACTATTGACTCTTTTTAGCGTAAAATAGAGGGTA CDS_0147 168210 168368 brie28-concat.gff p_0059 169123 p_0059 TGTTGTATA 2 + 0.99 intergenic TTTGTTTTCAGTCATCTACTGGTTTTGTTGCTATTGAGTTACTAAATAGCACTCATGTTGTATACTGGTAA CDS_0148 168949 169200 brie28-concat.gff p_0060 170886 p_0060 GAATAATAA 3 + 0.73 intergenic AGAGTGGAATAGCCTACTCTGTTTTTTATTGGCTTCTTTTATGCTAAAATAAAGGGAATAATAAGAAAGAG CDS_0149 170804 170899 brie28-concat.gff p_0061 173666 p_0061 GTTTAATAT 3 + 1.0 intergenic TTGGTTTTGTATGACAAATCGAGCATTTCTAAAAAAAGTTGATATTCTTATTTCGGTTTAATATCATTGTA CDS_0153 173529 173999 brie28-concat.gff p_0062 176884 p_0062 TGATAAAAT 4 + 1.0 intergenic TGACTCCTCCCAGTTAATAATTGCTTATCTAGCTCTTTTTCTTTACTTACAAAAGTGATAAAATAAAGGTT CDS_0157 176784 176911 brie28-concat.gff p_0064 179673 p_0064 TGTTATCAT 2 + 1.0 intergenic TTTGCATGGGAGATGTTTTTTATTCTCATCAAATTTAGGATTTTAGGAGCTGAAATGTTATCATTTACTGT CDS_0159 179586 179885 brie28-concat.gff p_0065 179808 p_0065 AAAAAATAA 3 + 1.0 intergenic TTCAAGATGAAAAAATTACCGTTTATGATGATTTCTGGAAATTCCCTTGTTTTACAAAAAATAACTCGAGT CDS_0159 179586 179885 brie28-concat.gff p_0066 181825 p_0066 TGAAAATTG 3 + 1.0 intergenic AGGTAAAACTCTTTGTATGAACAAGGAGTTTTCTTTTGATAGATTGCTATTTTTCTGAAAATTGTGATACA CDS_0164 181733 181863 brie28-concat.gff p_0067 183893 p_0067 AAATAAAAT 3 - 0.96 intergenic GGTTTAACTTTCAACCCTTTTGTGCTATAGTTATAAACAAGTAAACAAGTAAATCAAATAAAATAGAGGTA CDS_0165 183888 183990 brie28-concat.gff p_0071 187153 p_0071 TTGATATAA 3 - 1.0 intergenic CCACCTATTCTATAAAATCTTCGTTACAGTTTCTTAACTTTCTTTAAACATTTTTTTGATATAATGTGTAC CDS_0169 187127 187416 brie28-concat.gff p_0068 187221 p_0068 GATTTTATA 3 + 0.99 intergenic TGAGTACACATTATATCAAAAAAATGTTTAAAGAAAGTTAAGAAACTGTAACGAAGATTTTATAGAATAGG CDS_0170 187127 187416 brie28-concat.gff p_0070 187311 p_0070 ATTTAATTA 3 - 1.0 intergenic TATACAATAATATTTTAACAGTATTAAGGCAGGATATTATCCTCTAATTTTTAAAATTTAATTATTTTATA CDS_0169 187127 187416 brie28-concat.gff p_0069 187377 p_0069 CTGTTAAAA 3 + 1.0 intergenic AATCTTATAAAATAATTAAATTTTAAAAATTAGAGGATAATATCCTGCCTTAATACTGTTAAAATATTATT CDS_0170 187127 187416 brie28-concat.gff p_0073 190465 p_0073 TGTAAAATA 4 - 0.1 intergenic ATCCTGATATACAGTTTTTTCTAGCATCACCTCATTGTCATCAGTCTCAATTTCCTGTAAAATAGTAAGGA CDS_0173 190436 190639 brie28-concat.gff p_0072 190576 p_0072 TGATATAAT 5 + 1.0 intergenic GGTGATGCTAGAAAAAACTGTATATCAGGATTGTCTTTAAATACAGTTGCTAATTTGATATAATGGGAAGG CDS_0174 190436 190639 brie28-concat.gff p_0074 194109 p_0074 TCTCTTTTT 2 + 0.77 intergenic AAAGCCAAGCAATGGCTTTTTTGTTATAATGATTATAATTAAGGGAAATGGAAGTTCTCTTTTTATTTTCC CDS_0177 194030 194158 brie28-concat.gff p_0075 199542 p_0075 TAAGATATA 3 + 0.9 intergenic AGTTTGTGTAAAAATACAGAGTAAACTGAGAAATTGGTTCAAAATACTATAAGGTTAAGATATACTTCTTA CDS_0182 199465 199749 brie28-concat.gff p_0076 199713 p_0076 TATAAATAT 3 + 0.99 intergenic TAACTGAATTGTCGAATTATTAAGAATTATGTCTTTACTTTAGACTATTTTAAGGTATAAATATACACGAA CDS_0182 199465 199749 brie28-concat.gff p_0077 204108 p_0077 CAGTATAAT 4 + 1.0 intergenic TGATTCTCTAGTCACCTCCTTTTGATTAGTAAGCGTTTATAATGAAGAGGCAAAACAGTATAATAAGGGTG CDS_0193 204022 204246 brie28-concat.gff p_0078 204578 p_0078 TGTTATAAT 5 + 1.0 intergenic GAGAGAGTGGGAGAGGAAATGCCAAGCGTTTACGACTTTTCCATCCTCTTTTTTGTGTTATAATGGAAACA CDS_0194 204500 204581 brie28-concat.gff p_0079 211446 p_0079 CGATATAAT 4 + 1.0 intergenic TTAAGTCTAGCTGCGGTTGGACTTTTTATTTTTCCTTGCAAAACCTCTGTGTTTCCGATATAATTAACTGG CDS_0200 211361 211467 brie28-concat.gff p_0080 213517 p_0080 AAAAATAAT 3 + 0.99 intergenic AATCGAGCTCTTTTTGTGATATACTAAAGTGGTTTTTTAGATTTGAGTTAAAAATAATGGTAGATTTCTAG CDS_0203 213424 213586 brie28-concat.gff p_0081 214622 p_0081 ACAAATTAT 3 + 1.0 intergenic TGGTGGCCTCTTTTTGTAAAAAAATCAAAAAAGTTTAAGAAAACGCTTTACAAATTATCAAAAGGTGCTAT CDS_0204 214524 214639 brie28-concat.gff p_0082 217852 p_0082 AAGAGTAAA 2 + 0.98 intergenic CTGTAACCTATCATGACCTAATGAGGGTAAAAAAACATTGTCAAAAGATAAATAAAAGAGTAAACTAGAAG CDS_0209 217774 217883 brie28-concat.gff p_0083 219333 p_0083 TGCTATAAT 5 + 1.0 intergenic TTTTTCTGTTATTAGCACTTCGTCTTTATTTCAATTTTACTAACGGCAGTCAAAGTGCTATAATGTAAGGG CDS_0210 219232 219421 brie28-concat.gff p_0084 220709 p_0084 TAGAATAAA 3 + 1.0 intergenic TGCATATTCTAATCTCCTTGGTATTAAATACTGTTCAGAACCCTTTAAAATGTGGTAGAATAAAGGATAAA CDS_0212 220601 220730 brie28-concat.gff p_0085 228942 p_0085 TGCTAAAAT 3 + 1.0 intergenic AAACTATCCAAAGTTTAGATTTTGGATAGTTTTTTCTTGACTATTTTTGACTAAGTGCTAAAATGAAAATA CDS_0218 228858 229026 brie28-concat.gff p_0086 232920 p_0086 GTCAAAGCA 1 - 1.0 intergenic GTCAAAGCAACAAAAAAACTCTCACAAAAAGAGACTGTAGAAAAGACGCAAAACTCAGAAACTGTTGAACA CDS_0223 232696 233010 brie28-concat.gff p_0087 233872 p_0087 TATGTTATA 2 - 1.0 intergenic ATAAGTTGCTTTTATTGATTTCGAAAGCCTTGACTACCTTGAATCTCCTTTACATTATGTTATACTTTACG CDS_0226 233702 234022 brie28-concat.gff p_0089 240731 p_0089 ATACTAATA 3 - 1.0 intergenic TGGCTTAGTTTGCGTTTTTTTGCATTTTTATATACAAAAAACGTAAAAAGATACTATACTAATATCAGAAA CDS_0234 240720 240894 brie28-concat.gff p_0088 240871 p_0088 TGCTATAAT 5 + 1.0 intergenic CAGGTTCAAGTTACCTCGTAAACTTCTCTTACTATCTTTAAAAATCCTTCAAAAATGCTATAATAGAAGCA CDS_0235 240720 240894 brie28-concat.gff p_0091 245147 p_0091 TGTGCTATA 2 - 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_0237 245117 245349 brie28-concat.gff p_0090 245258 p_0090 CTATTATTA 3 + 0.65 intergenic TGGATTTCATTTGACAACAGGAACCCTTGAAACTGTTTTGTCAGCTAAACCAAGGCTATTATTAGCCTTGG CDS_0238 245117 245349 brie28-concat.gff p_0092 249683 p_0092 TGATAAAAT 4 + 1.0 intergenic TCGTACCCCTAGGTTTAACCTAGGGGTATTTTTAAATTGAATTTTCAGAAATTAGTGATAAAATAGATAGT CDS_0243 249607 249709 brie28-concat.gff p_0093 254785 p_0093 TGTAAAGTA 2 + 0.66 intergenic TTATGTTTTAAACTTGCATTTTTATATTTTTTTCTGTATCATGAAAACAATAGACTGTAAAGTATTAGTAA CDS_0247 254707 254816 brie28-concat.gff p_0094 258954 p_0094 TGTGCTATA 2 + 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_0250 258712 258985 brie28-concat.gff p_0095 260048 p_0095 TGCTATAAT 5 + 1.0 intergenic TAGGGAGTGTTTTTTTTGTTTTATCTTTGTGAAGTCCGAGTTTATAAGAGTTTTGTGCTATAATAGGGGGA CDS_0251 259938 260068 brie28-concat.gff p_0096 263243 p_0096 GGCTATAAT 4 + 0.96 intergenic TTTAATATTGGAATACTAAGATATAAAAATGACACTAGGCAAATCTTTTGAATTAGGCTATAATAGAATAT CDS_0252 263163 263319 brie28-concat.gff p_0097 265923 p_0097 TGGTATAAT 5 + 0.05 intergenic GATGAATGGTTTCATTGACGAAGGTGAGTCCAAATCAAACCATGGCGATAGTATTTGGTATAATATGGTCT CDS_0255 265835 266043 brie28-concat.gff p_0098 266020 p_0098 AGATATAAT 4 + 0.71 intergenic CAGTGTTACGTTACTGTGACAAAGAACCAATTGATTTGCATTAACTGGTTTTTTAAGATATAATGGCGTTT CDS_0255 265835 266043 brie28-concat.gff p_0099 270845 p_0099 AGGATTATA 3 - 1.0 intergenic ACTCATTGTAGCAGAAATTCCTTGATAAATCTAGGAATTGACCGACTTTATAGTAAGGATTATACTGAAAG CDS_0259 270816 270919 brie28-concat.gff p_0100 271730 p_0100 TGATATAAT 5 + 1.0 intergenic CTAAGGATGATTTTATTGAGAAACATTCGCCTTTTAAGATAAATTTAAGCTCTAGTGATATAATGAAGAAG CDS_0261 271656 271758 brie28-concat.gff p_0101 273581 p_0101 TAAAAATTA 3 - 0.8 intergenic ATGTTAAAAAAAATGTTGATGCTTATTTTAACGCAGTTCTTCTAGGTGGAGAAAGTAAAAATTACAATAAA CDS_0263 273365 273758 brie28-concat.gff p_0102 274258 p_0102 TGCTATAAT 5 + 1.0 intergenic TATTATGAAATATCCCTTGAGATTATTAGAAATTTGGATTTCAAGCCTTTTCTTATGCTATAATAAGGTTA CDS_0265 274036 274283 brie28-concat.gff p_0104 276112 p_0104 TGTTTATAT 3 - 1.0 intergenic ACTTGTAAGATTTCAGGGAAAAAATTAGGTTTTTATATAAGTCTTGAAATTATTATGTTTATATAAAGGGG CDS_0266 276105 276346 brie28-concat.gff p_0103 276317 p_0103 TGCTATAAT 5 + 1.0 intergenic TTTTTTGCGGACTCGTTAAGAAACTAACGTCTTGTTTGTCAGTAAGGCCTATTTTTGCTATAATATAAGGT CDS_0267 276105 276346 brie28-concat.gff p_0106 285332 p_0106 CAAAATAAA 3 - 1.0 intergenic CACCTTTTTTACAGGAATAACCTATAAAGCTGGCTGAAAAGGATGATTTTTCGGCCAAAATAAAGTATCAT CDS_0278 285307 285596 brie28-concat.gff p_0105 285476 p_0105 TGCTAAAAT 3 + 1.0 intergenic GAAGTTAAAAATATTAATTTTTTTCTACTAATAGTGTTGACTTTTACAGCTAAAGTGCTAAAATATACTCA CDS_0279 285307 285596 brie28-concat.gff p_0107 286208 p_0107 TTTTTTTAT 3 + 1.0 intergenic GTTATTGACTATCAACAAATTAGAAATCCATAAATTAAGAACCTTGTCATCAAGTTTTTTTTATGTTATCC CDS_0280 286105 286417 brie28-concat.gff p_0108 286407 p_0108 TGTTAAAAT 4 + 1.0 intergenic TTTTGCGTAGTCTTTTTTTTGGCATAGGCAAATCCATTGGGAACTTCTTTCAAATTGTTAAAATTTGGAGG CDS_0280 286105 286417 brie28-concat.gff p_0109 288816 p_0109 AGTTATATT 3 + 1.0 intergenic TACTTTTTTTTAGGGTTAAATATGTACTATAGAAATATAAATAATAGTTAAAAGGAGTTATATTTTGAAAA CDS_0284 288721 288897 brie28-concat.gff p_0110 291077 p_0110 TGTAGTATA 2 + 1.0 intergenic TTATATAGAAAAATTAAGGAATCTAAAATTTCAAATCTTGCAGCCGTCTTCTTTATGTAGTATACTGGGGG CDS_0289 290992 291100 brie28-concat.gff p_0113 292820 p_0113 TATAATAAA 3 - 0.95 intergenic GACCTATTTTTAGTAATTTTACAGTTGGGTGATAAAATTGAACATTTTTTATAATAAAGTCTTTTTTGGAC CDS_0291 292797 293205 brie28-concat.gff p_0112 293187 p_0112 TGATAATAA 4 + 1.0 intergenic ATCTAAATGTTTCAAAATTTCTGAAAATTCGTTGACATGTGTTTTCAAAATAGTATGATAATAACATAAAA CDS_0292 292797 293205 brie28-concat.gff p_0114 301436 p_0114 ATATTTTTA 3 + 1.0 intergenic AGTAGGAAATCGTTCTAGGTTTCCTACTTTTTTCTTTGTCAAACAATTGATATTTTTAGGTGATAGTATTT CDS_0303 301357 301522 brie28-concat.gff p_0115 302471 p_0115 TAAAATTTT 3 + 1.0 intergenic ACGAAAAGCCTTTGTTTATTATATGATAAATAAAAGAGGGAAATGATGAAAAAGGTAAAATTTTTGCCAAC CDS_0304 302370 302560 brie28-concat.gff p_0117 308954 p_0117 AAACATAAT 3 - 0.99 intergenic CTTTGAGATTGATTGTTTTTATTGTAACAGAATTCACTAAGCTTAACTAATACTTAAACATAATCAAAGTG CDS_0307 308903 309035 brie28-concat.gff p_0116 309015 p_0116 TACAATAAA 3 + 1.0 intergenic ATTTTCTTATCACTTTGATTATGTTTAAGTATTAGTTAAGCTTAGTGAATTCTGTTACAATAAAAACAATC CDS_0308 308903 309035 brie28-concat.gff p_0118 310018 p_0118 ATAATAATT 3 + 0.99 intergenic AAAACTATAGAGATATACAATTATAAACAATTTGCTACAATTCTCATCTTATGGGATAATAATTTAACACT CDS_0309 309883 310043 brie28-concat.gff p_0119 314204 p_0119 ATCATAATA 3 + 0.96 intergenic TTTGAAAGCCTATTTATCAAAGGCTTTTTTCATATATTGACGATTTCAGTAATTTATCATAATATGGAAAC CDS_0315 314131 314254 brie28-concat.gff p_0120 315590 p_0120 TGGTAAATT 3 + 0.99 intergenic GCCAAAGGCTATAACTAGCTCAAGAATTTGTCATCTTTGAAATATCTATAAAAAGTGGTAAATTAAACATC CDS_0316 315462 315616 brie28-concat.gff p_0121 319713 p_0121 TTCGATAAA 2 + 1.0 intergenic TCAGAGCTTTTTTAGTTTTTTATTCCCAATTTTTGAACGGTATTTGTATGAAATTTTCGATAAAGTACTTT CDS_0320 319584 319794 brie28-concat.gff p_0124 324903 p_0124 TGGTAAAAT 3 - 1.0 intergenic CTGGTTCTTACCTAATCTTAAACAATCTTTTCCATTAGATGAAAGGGATTAATTATGGTAAAATAGGGGCA CDS_0324 324877 325174 brie28-concat.gff p_0123 324997 p_0123 AATTTTAAA 3 - 0.94 intergenic CTTAATTAACATTATATCAGATTTTTAAAAAAAAATAACAGCTTTAATATTACATAATTTTAAACTTAGGA CDS_0324 324877 325174 brie28-concat.gff p_0122 325030 p_0122 TGTAATATT 3 + 1.0 intergenic TTAGGTAAGAACCAGTTTTTAATAAGCTACTAAAAACCTCCTAAGTTTAAAATTATGTAATATTAAAGCTG CDS_0325 324877 325174 brie28-concat.gff p_0125 325866 p_0125 GGGTAAATA 2 + 0.82 intergenic GCTAAACCTAAATACTTTTTGAGGAAATGAAAGCCAAAAAATTTTTTATAAAAGAGGGTAAATACTTATTA CDS_0326 325710 325866 brie28-concat.gff p_0126 328161 p_0126 TGGTAAAAT 3 + 1.0 intergenic ACTAACTCTCAATCATGAGCACGTCTCGTTAAGGGGTGCTTTTTATGTGTTTTTATGGTAAAATAGAGTAC CDS_0328 328069 328191 brie28-concat.gff p_0128 335742 p_0128 TGATAAAAA 4 - 0.98 intergenic TTATATTTACTGTAACACAACAAATAACTAAAATAGATGTAAGTTATGTTTTTAATGATAAAAAAGAGGAC CDS_0333 335718 335917 brie28-concat.gff p_0127 335802 p_0127 TTATTTGTT 2 + 1.0 intergenic ATTTCTTTTATGTCCTCTTTTTTATCATTAAAAACATAACTTACATCTATTTTAGTTATTTGTTGTGTTAC CDS_0334 335718 335917 brie28-concat.gff p_0129 337432 p_0129 TAAAATAAA 3 - 0.95 intergenic TTTTGGAGATATAACCCATTACATTTCAGATTATTATATCTGATAAAAACACTAGTAAAATAAATATAAAC CDS_0336 337361 337724 brie28-concat.gff p_0131 342672 p_0131 AAAGTATAT 3 - 1.0 intergenic TTTTCTCTATTTAGATATAGCTTTAAGCTATATCTAAATTCTTTTATCTGAAAAGAAAGTATATTTGCAAG CDS_0341 342476 342852 brie28-concat.gff p_0130 342709 p_0130 CAGATAAAA 3 + 1.0 intergenic AAAAGTATCATAAAATTGAAAAAAACATCAAATTCTTGCAAATATACTTTCTTTTCAGATAAAAGAATTTA CDS_0342 342476 342852 brie28-concat.gff p_0133 344439 p_0133 TGCTATAAT 5 - 0.68 intergenic AAACCCGAACGTTCTTAGAAAACTCTTTCTCAATCACCAATAAAGGATGGATTTTTGCTATAATAGGAAC CDS_0343 344440 344649 brie28-concat.gff p_0132 344580 p_0132 AATATTAAT 3 + 1.0 intergenic TTCATAAGAAAAGTCTCAGGAAATAAACCTTGCACAGTCAAATAATTTTATGTAGAATATTAATATTGCAT CDS_0344 344440 344649 brie28-concat.gff p_0134 346237 p_0134 TATTAAATT 3 + 1.0 intergenic TTGAAATCTTGTTAGAAATATTAACTTTATGGAGGTTTAATTTAATGTAAGAAAGTATTAAATTAAGACAG CDS_0345 346070 346342 brie28-concat.gff p_0135 346341 p_0135 TTGATATAA 3 + 1.0 intergenic TATTTATAAGCTTTTATGGATTTTTACAGTGGACTATAGTCCAGATTTTTATTTTTTGATATAATGAAAAC CDS_0345 346070 346342 brie28-concat.gff p_0136 348616 p_0136 TGCTATAAT 5 + 1.0 intergenic GATTCCCAGCCTTTTGGCTGTCATATGATTATTACTTGCAATAGTTTTTAAGCTATGCTATAATATGAAGA CDS_0348 348534 348675 brie28-concat.gff p_0137 355059 p_0137 TGGTAATTT 3 + 1.0 intergenic ATCAAATGAAAAGTCGTGTAGGTTTCAAAAAATATCGCAAAATTCTTAACAAAAGTGGTAATTTTGTATAT CDS_0356 354830 355204 brie28-concat.gff p_0138 357976 p_0138 GCTAAAATA 3 - 0.92 intergenic ACAATCTAGTTAATTATAAACTTTTGGCTCTGACTTGTAAAACAAGAACATTAAGGCTAAAATAGGAACT CDS_0357 357977 358072 brie28-concat.gff p_0139 360530 p_0139 TAGTAATAA 3 + 0.96 intergenic GAAAAGTCACTTTTAATCATCTCAGAAAGTTTGTCTGTTCTATATTTTGAGGTTATAGTAATAAACTATAT CDS_0360 360236 360643 brie28-concat.gff p_0140 363541 p_0140 TGCAAGTAA 2 + 1.0 intergenic AACAGGTAAGATTCATCTGTCTAAAAAATAAAATTGGATCCTTTCCAAAAACGTTTGCAAGTAAAGCAAGC CDS_0364 363329 363599 brie28-concat.gff p_0141 370566 p_0141 TGGTATAAT 5 + 0.99 intergenic CTGATTGTAAGGTACTAATTTTTCAGCAAAATAATACAATCGGTTACAACTAGTGTGGTATAATACAAGTA CDS_0374 370457 370611 brie28-concat.gff p_0142 387404 p_0142 GAGTATAAT 4 + 1.0 intergenic ATAAACAAAAAATTTCAAAATTATTGGAAAATTTCTTTATTTTTCTAAAAAATAGGAGTATAATAGGACTA CDS_0387 387329 387428 brie28-concat.gff p_0144 389956 p_0144 TGCTATAAT 5 - 1.0 intergenic AATCAGACTAAATCTTACTCGCTTTTAAAAACAATATGACAAATTATCAGAATTTTGCTATAATTGTAGAA CDS_0388 389930 390062 brie28-concat.gff p_0143 390026 p_0143 TAAGATTTA 2 + 1.0 intergenic ATTCTACAATTATAGCAAAATTCTGATAATTTGTCATATTGTTTTTAAAAGCGAGTAAGATTTAGTCTGAT CDS_0389 389930 390062 brie28-concat.gff p_0145 390798 p_0145 TATGATATA 3 + 1.0 intergenic TGTTTTGAGGTATCAAATTAAAAAATTATAAGTTTATGTTGACCTTTAGGTGGACTATGATATACTAGGAA CDS_0390 390700 390913 brie28-concat.gff p_0146 391781 p_0146 TGATATAAT 5 + 1.0 intergenic TTTCAGAAATTAAAACTAAAGCTTTCAAATTGGACTTGCTAAATTAGTTTGAGTCTGATATAATTTGATAA CDS_0391 391704 391808 brie28-concat.gff p_0147 393571 p_0147 TGATTATTA 3 + 0.92 intergenic TAGAGAATATTCTTATTAGGGATATTCTCATTTGTTTATAAAATTACTTTGATTATTAAACTATTTATTTG CDS_0394 393492 393597 brie28-concat.gff p_0149 402122 p_0149 TGGTATCAT 2 - 1.0 intergenic TGGATATTTTAATTTATATTCCTCAAATAAATACTAGAACTTTAAACTGATTTTGTGGTATCATAACTCTA CDS_0403 402102 402249 brie28-concat.gff p_0148 402195 p_0148 AATATAAAT 3 + 0.61 intergenic GAGTTATGATACCACAAAATCAGTTTAAAGTTCTAGTATTTATTTGAGGAATATAAATTAAAATATCCATA CDS_0404 402102 402249 brie28-concat.gff p_0150 402601 p_0150 TCCATTATA 3 + 1.0 intergenic AACAGAAAAAAGGTTTTTTACAAAAGATGGTTCTGTTGCAAAGTTTACTCTCAGATCCATTATAGGGTAAA CDS_0405 402485 402636 brie28-concat.gff p_0151 403686 p_0151 TATAAATAT 3 + 1.0 intergenic CTCTAATAAAACCTATGAAAAAGGTCTAGGTATTCATTTGAGAAAAAGCTATAAATATGATAAACTAGAAG CDS_0406 403316 403730 brie28-concat.gff p_0157 410483 p_0157 TTTTATGAT 2 + 0.72 intergenic CGTTGTGACGGGATTGTTTTTTTTGTGTCGTAGTAGATTTTTGTCAGGGTACCTATTTTATGATACAGTAT CDS_0416 410394 410544 brie28-concat.gff p_0159 413867 p_0159 TCATATAAT 4 - 1.0 intergenic AATAATAGTTACTCCCTATTATAGCATAATTTTTTTAGCATTTTTTGAGAGAAAATCATATAATAGAGAGT CDS_0418 413842 413951 brie28-concat.gff p_0158 413928 p_0158 TGCTATAAT 5 + 1.0 intergenic AATATTTCGTACTCTCTATTATATGATTTTCTCTCAAAAAATGCTAAAAAAATTATGCTATAATAGGGAGT CDS_0419 413842 413951 brie28-concat.gff p_0160 419933 p_0160 GGGAAAAAT 2 + 1.0 intergenic AACTTAAATTGGCAGAATAAGGGTAATCAAAAAACTTTTTCTCTTGTCATTATCGGGGAAAAATGATAGAA CDS_0425 419843 420072 brie28-concat.gff p_0161 421642 p_0161 TGCTATAAT 5 + 1.0 intergenic TCAGTTTAAATACTCATTTTTCTGTCAATAATATTCCCATAATAAAACATATTTATGCTATAATAAAGAGT CDS_0429 421468 421669 brie28-concat.gff p_0162 429636 p_0162 CCAAAAATA 3 + 1.0 intergenic CAAACAAATTCAGCTTCAAGTCTTTAAATAAGGAGAAAATTTTTGAAAGAATAACCCAAAAATAAAACGCT CDS_0438 429463 429807 brie28-concat.gff p_0164 429684 p_0164 TGTTAGAAT 2 - 1.0 intergenic TATAAATTTTCAGAATCTTATTGTCAAGTGTTTTTTGTCATTTTTTTGATTTGCATGTTAGAATTTATGAC CDS_0437 429463 429807 brie28-concat.gff p_0163 429759 p_0163 TGAAAATTT 3 + 1.0 intergenic TAAATTCTAACATGCAAATCAAAAAAATGACAAAAAACACTTGACAATAAGATTCTGAAAATTTATACTAT CDS_0438 429463 429807 brie28-concat.gff p_0165 431274 p_0165 TGATATAAT 5 + 1.0 intergenic AAAGAAGCCTGCGGGTTTCTTTTTTTTAGCTGTTTTCCTAGAAGTCAGCTATTTTTGATATAATAAGTTGA CDS_0439 431159 431418 brie28-concat.gff p_0166 431988 p_0166 AAGAACTAA 2 + 1.0 intergenic CCTCACTCTTTTTTTAGTTCTCATAGGAACTTTTTTTCTTGACAATAGTTCTTATAAGAACTAAAGTAGTT CDS_0440 431828 432020 brie28-concat.gff p_0167 436132 p_0167 TGTGTTATA 3 + 1.0 intergenic AAATTATAAGATTTAACAAAATTCCATAAAACGTATGATTGTAAGTCATGCGTTTTGTGTTATACTGAGAA CDS_0443 436049 436205 brie28-concat.gff p_0168 437819 p_0168 TGATAAAAT 4 + 1.0 intergenic GGTCATCTTGTAAACATATTTTTTTAATATTTGACTAGGTGAAAATCCTAATTTATGATAAAATAGTAAGG CDS_0445 437665 437997 brie28-concat.gff p_0169 440579 p_0169 ATTTTTTTT 3 + 0.99 intergenic GTTTTTTACAATTTTTTATTAAGTGGTTAGCATTTGAATTGAAATAAATTGTTACATTTTTTTTACAAATA CDS_0449 440478 440719 brie28-concat.gff p_0170 440686 p_0170 TGGTATTAT 3 + 0.99 intergenic CTAGTTAGTAATTGCTTTAAAGAGCAGTAAGTCACAATTTTTTTGATGGAAAGTGTGGTATTATTGTAGAT CDS_0449 440478 440719 brie28-concat.gff p_0172 443663 p_0172 CTCTATAAT 4 - 1.0 intergenic AGGATAAAAATACTTCCCCTTAGTCTAGAATTTTTTTCAAACACCATTATTTTGGCTCTATAATTTCTGTA CDS_0450 443560 443822 brie28-concat.gff p_0171 443801 p_0171 TAAAAAAGG 2 + 0.98 intergenic TCCTTGTTAAGTTCATGTGACACCATTTATTTGGCGTTGAAAATCAACTTAAAAAAGGTAGAATGGTCTAG CDS_0451 443560 443822 brie28-concat.gff p_0173 447352 p_0173 TGGTATTAG 2 + 1.0 intergenic TAGCAAAAAAAGGAATTGATAAAATCTAATCAGTTAATTTCATAAATAAGTAAAGTGGTATTAGAAAGAGA CDS_0454 447129 447570 brie28-concat.gff p_0174 448355 p_0174 TGCTATAAT 5 + 1.0 intergenic GTGAATATTAAAAGATCAAAAATCAGCTAGTCTGGTTTTTTTAGTGTCCAAAACGTGCTATAATAAGATGT CDS_0456 448210 448404 brie28-concat.gff p_0175 451609 p_0175 TGTTATAAT 5 - 0.33 intergenic TATCAGGTCTTCATCTATTCCTATCAGGATTTTACTGATATTAGACTTCTCATTTTGTTATAATATAGGTC CDS_0457 451581 451718 brie28-concat.gff p_0176 455867 p_0176 TAGTAAAAA 3 + 0.94 intergenic ATCTCTAGCACTCGCTAGGGATTTTTTATATAATAAAACACATGGTTAAATCATATAGTAAAAATGCAAAT CDS_0462 455654 455874 brie28-concat.gff p_0178 458060 p_0178 AAATAATTA 3 + 1.0 intergenic GTTTAGTGGTTTTGTCTTTTATTCTTTTAGTATTTTCTAATTGGTATAAATTAAGAAATAATTAAGGAGAA CDS_0464 457722 458064 brie28-concat.gff p_0179 460760 p_0179 TAAAAAAAT 3 + 1.0 intergenic TACAATAAAAGAAACTTAAAAGGTAGGATGAAAATCCTATCTTTTTTCTTAAAAAAATTAGTAATAATATT CDS_0465 460682 460844 brie28-concat.gff p_0180 462307 p_0180 TGGTATACT 2 + 0.89 intergenic CGAAAATCGGATAGTTTATGAGTTTATGATTTAAGTGGGAACAAGTCAAAAAAATTGGTATACTAGTGGGC CDS_0469 462221 462410 brie28-concat.gff p_0181 463493 p_0181 TGCTATAAT 5 + 0.99 intergenic TAGCCTCTCTTTATCAGATGATTGAATTTTTCAATTTTTGTGATGTCTTTTGGAGTGCTATAATGGTTAAC CDS_0470 463378 463511 brie28-concat.gff p_0182 465588 p_0182 GAATAAAAA 3 + 1.0 intergenic AAAATACTGCTTGTTTTTTTCATATTTTTGCATTTCCCTCTTGACAAATGAATAAAAACACAATAAACTAG CDS_0472 465490 465619 brie28-concat.gff p_0186 470628 p_0186 AAGAAAAAA 3 - 0.98 intergenic CCTATTTGAAAGGGGATACAATGACTTCTCAAAAGAAAAAAACAAGTCAAGTTAAAAGAAAAAATTGAAAC CDS_0476 470578 470853 brie28-concat.gff p_0183 470678 p_0183 GTTTTTTTC 2 + 1.0 intergenic GGTTTAGGACAAGCAGAAGTAGTTTCAATTTTTTCTTTTAACTTGACTTGTTTTTTTCTTTTGAGAAGTCA CDS_0477 470578 470853 brie28-concat.gff p_0185 470699 p_0185 TAGAATAAT 3 - 0.99 intergenic GGAGACAAGTATTCTTTTTTACTGAAAATTCTGTGCATTTTCACCCCATTTTTGTTAGAATAATAGCTTGA CDS_0476 470578 470853 brie28-concat.gff p_0184 470795 p_0184 AGAAATATT 3 + 1.0 intergenic GGGTGAAAATGCACAGAATTTTCAGTAAAAAAGAATACTTGTCTCCTTAAATGGCAGAAATATTCTGTCAA CDS_0477 470578 470853 brie28-concat.gff p_0187 474047 p_0187 AGATATAAT 4 + 1.0 intergenic TTTATAATGCCGATCTAAAAATGAGCCAAGTTTATCTGACAATTTTAGAACTTTAAGATATAATAGTAGTA CDS_0480 473960 474073 brie28-concat.gff p_0188 474769 p_0188 TGTTGTAAA 2 + 1.0 intergenic ATAATGGTAAAGTTCTCCTTATTTATTAAGGAGAATCCTTGCAATTTCTCTGAAATGTTGTAAACTTAAAG CDS_0481 474690 474825 brie28-concat.gff p_0189 475188 p_0189 ATAGAATAA 3 + 1.0 intergenic CTTATTTGCAAATTCAGGTCCCCACAATTTCATTTGTCTTGAGATTAAAAATGTGATAGAATAAGACTATT CDS_0482 475028 475296 brie28-concat.gff p_0190 485994 p_0190 TTAGTTTAA 2 + 1.0 intergenic TATAAAAGATTAAATAAAAGTTTTAAAAATGAAAACGGTTAATTTAGATTTTACTTTAGTTTAAGATATCA CDS_0495 485824 486076 brie28-concat.gff p_0191 487475 p_0191 TACTATAAA 3 + 1.0 intergenic ATGAAAAGATTATAAAAGTAGTAGAAAAAGTATTATTGAAAGAAATATTTGTGATTACTATAAAGAAAAAC CDS_0496 487356 487594 brie28-concat.gff p_0192 489011 p_0192 TGATAAAAT 4 + 1.0 intergenic AAGCAAGTCGAGTTTTCGGAATTTTCCTAAAAACCTAGTAATAGTAAGGGATTTGTGATAAAATAAACGAG CDS_0497 488790 489039 brie28-concat.gff p_0193 489936 p_0193 TGATGATAT 2 + 1.0 intergenic TAATAAGATAAATATGTGGTTTATATAAATAGAGTTTTGAAACGTTTTGTGGTTTTGATGATATGCTAAGA CDS_0498 489797 490035 brie28-concat.gff p_0194 493620 p_0194 ATTTTTTTT 3 + 1.0 intergenic ATAAGATGTTAGAAAATAAAAAATTATCAAAAAATTCCATAAATAAGCTTGTGGGATTTTTTTTTGTGTGA CDS_0503 493527 493665 brie28-concat.gff p_0196 499468 p_0196 TGTAAAATG 3 + 1.0 intergenic GTGCTTTCTTATTTAAGTACTTTTTTTGTTTTTTACAGAATTATAACAGTAAAGGTGTAAAATGGAAATAG CDS_0511 499386 499491 brie28-concat.gff p_0197 502112 p_0197 TGTTGGAAA 2 + 0.92 intergenic AGATTTTTGAAACCTCAAGTTCAAAATCAGTTGATTAAATCCACTTTGATGAGACTGTTGGAAATCTATGG CDS_0515 501933 502217 brie28-concat.gff p_0198 504629 p_0198 TTCAAAAAT 3 + 1.0 intergenic TCCTATTTTTTAAATTAAAATATTCTGAATTATATACACAATATTGACCAATTGTTTCAAAAATGGTACAA CDS_0517 504523 504694 brie28-concat.gff p_0202 506822 p_0202 TGATAAACT 2 - 1.0 intergenic TTACAAAATTATTTTTTGTTTTTGGATGTAAAATCTTGACCAAGACTTTAAGTCGTGATAAACTATTGTTA CDS_0518 506791 507093 brie28-concat.gff p_0199 506924 p_0199 AATTATTTT 3 + 1.0 intergenic GTCAAGATTTTACATCCAAAAACAAAAAATAATTTTGTAAGAGTTTGCAAATTATTTTAACTCTGATATTA CDS_0519 506791 507093 brie28-concat.gff p_0201 507019 p_0201 TAAATAAAT 3 - 0.92 intergenic GGGCTCCTTTTTTTCTAGGATTTTAGTTGCTTTGAGGCTTTTTCAACAAAAAAACTAAATAAATACGAAGA CDS_0518 506791 507093 brie28-concat.gff p_0200 507078 p_0200 AACTAAAAT 3 + 0.99 intergenic AACCCAATTGGTTCTTCGTATTTATTTAGTTTTTTTGTTGAAAAAGCCTCAAAGCAACTAAAATCCTAGAA CDS_0519 506791 507093 brie28-concat.gff p_0203 509898 p_0203 AATGAAATT 2 + 1.0 intergenic TTAGCAGAAAAAAACCTCTTGGGAAACGGTTAACAGAGGTATTTAATTATGCTAGAATGAAATTATCAACA CDS_0524 509794 510155 brie28-concat.gff p_0205 510011 p_0205 TTTTCTATA 2 - 0.92 intergenic AAAGATCTCCTTTTTTCAAGAAATCTAAACAAGACATTCCTTCAAATTAGTGAAGTTTTCTATAGTAAGGA CDS_0523 509794 510155 brie28-concat.gff p_0204 510091 p_0204 GATCTTTAT 2 + 0.75 intergenic TAGAAAACTTCACTAATTTGAAGGAATGTCTTGTTTAGATTTCTTGAAAAAAGGAGATCTTTATGTCAACT CDS_0524 509794 510155 brie28-concat.gff p_0206 511818 p_0206 TGGTATAAT 5 + 1.0 intergenic AATTCAAGCTCAGGGTTGCCTGGGCTTTTTACTATCAACAAAAGAGGATAAAATCTGGTATAATAAAACTG CDS_0528 511362 511848 brie28-concat.gff p_0207 514191 p_0207 TGCTATAAT 5 + 1.0 intergenic CTTGTGAGAGAGTGTCCGTTTTTTTTTTTTTTTTCTTGTAAAAGAGTCTGAAATTTGCTATAATCTACCTA CDS_0531 514097 514324 brie28-concat.gff p_0208 522451 p_0208 TAGTATAAT 4 + 1.0 intergenic TAAAATCTATTTCATAATCTCTCCAGAGCTTCTTGTTTCATTTCATATTTTAAAATAGTATAATAATGTTT CDS_0536 522185 522562 brie28-concat.gff p_0209 522539 p_0209 TATAGTTTT 2 + 0.95 intergenic GGGGCTTTTTTCTTACACGAATGTAAGCTAAGAAGTTAAAAATGAAAGCTTAGGCTATAGTTTTGTTTCCT CDS_0536 522185 522562 brie28-concat.gff p_0210 523442 p_0210 AGGTAAAAA 3 + 0.94 intergenic GTGAAAGAAAATCAGTCCAAAGTTATTAAAAATCAAAAAGAGTTTGGATTATTGAAGGTAAAAAAGGAACA CDS_0537 523320 523471 brie28-concat.gff p_0211 525540 p_0211 TCCAAAAAA 3 + 1.0 intergenic CTTGAATCTTTGGATTTTGAGAGGCTTTATGATGTTCAAAAAAGATAGAGAAAAATCCAAAAAAGTTGTAT CDS_0544 525460 525750 brie28-concat.gff p_0213 532653 p_0213 TGCTATAAT 5 - 1.0 intergenic ACCTTCCTGTCAAGCGTTTTCACTTGATAAGTTTAATGACTGTCGCCCTATATCGTGCTATAATAAAAAGG CDS_0548 532627 532777 brie28-concat.gff p_0212 532748 p_0212 AGATAATAA 3 + 0.99 intergenic GGCGACAGTCATTAAACTTATCAAGTGAAAACGCTTGACAGGAAGGTTAAAAAAGAGATAATAAAGAAAAT CDS_0549 532627 532777 brie28-concat.gff p_0216 535734 p_0216 AAGAATATT 3 - 1.0 intergenic TACGGCCTTACGTACTTGAATGTTTTTCATTTGGAATTCTCCTTGCATCTTTAATAAGAATATTGTATGCT CDS_0551 535649 535872 brie28-concat.gff p_0214 535754 p_0214 TACAATATT 3 + 0.98 intergenic ATAACGTTAAAATGGTCAATTATGACATAATTGTAAGAAAAATGTAAGTTTAGCATACAATATTCTTATTA CDS_0552 535649 535872 brie28-concat.gff p_0215 535844 p_0215 TATTATTTA 3 + 0.03 intergenic AAATGAAAAACATTCAAGTACGTAAGGCCGTAGCTCAAACCGAAATTAGCTGGGGTATTATTTAATTGCTT CDS_0552 535649 535872 brie28-concat.gff p_0217 538883 p_0217 CTGTATAAT 4 + 1.0 intergenic TTCTGTTGTGACAATTCTCCTCCAAACAAATCAATTGCCTTGTCCTCTTTGATAGCTGTATAATAGTTAAG CDS_0555 538751 538940 brie28-concat.gff p_0218 540037 p_0218 TGTGTAATA 3 + 1.0 intergenic TTGCAAATTATTTCTAAAATAATGTCAGATTTATATTGCAAATAGAAACATATAGTGTGTAATATCAATGA CDS_0556 539923 540081 brie28-concat.gff p_0219 541734 p_0219 TTTTATAAT 5 + 1.0 intergenic TCTACTTTTTAGATTTATTATTTGTAATCAATCTAAATAACTATTATAATGCTTTTTTTATAATGATTCTA CDS_0559 541659 541751 brie28-concat.gff p_0220 543405 p_0220 TGGTATGAT 2 + 1.0 intergenic AGAAATACTTATGGAATACTATAAATATTTTTTATTTCTCAAGTATCGCTTCTGGTGGTATGATGGAATCA CDS_0561 543233 543469 brie28-concat.gff p_0221 544821 p_0221 AAGAAAAAA 3 + 1.0 intergenic AGCTTAAGGATTTTAAATTGGTGCTGCTTTTGAAAATAAAAAGGAGGATGTGCATAAGAAAAAATACTCTT CDS_0562 544614 545047 brie28-concat.gff p_0222 544978 p_0222 GATATTATT 3 + 1.0 intergenic TAAGGTCTTAAAATAGCGGAGATTTTTTTCTCTTGATTTTAGTTAAAATGAAAGCGATATTATTAAAGAAA CDS_0562 544614 545047 brie28-concat.gff p_0223 545575 p_0223 TTTTAGTTA 2 + 0.45 intergenic GTTTATAATTCTATCAGAATGAAAGAGAAGTCGCGCCATGAATTGGTGTGACTTTTTTTAGTTAGGATAAG CDS_0564 545446 545754 brie28-concat.gff p_0224 545676 p_0224 TGCTATAAT 5 + 1.0 intergenic AAGTGTCTATAAAGCTTAAATCTGCTTATTTTTTTCTAATCTAGGTATTGTTTTATGCTATAATGAGCAGA CDS_0564 545446 545754 brie28-concat.gff p_0225 545987 p_0225 AGAAAAAAC 2 + 0.93 intergenic AGCAAATATTTCTTTCGAAGCTTTTTGGAGAAACTGTGGACAACTCTTTAGAAAAAACGTTGTGTTCTTCG CDS_0565 545915 546155 brie28-concat.gff p_0226 546136 p_0226 AATTAAATG 3 + 1.0 intergenic AAAAGCTGTAGCTTTTTTATTTTCAAGTTCAGATATTGGCAGTCTGAAAAATTAAATGATAGAATGGCAGT CDS_0565 545915 546155 brie28-concat.gff p_0227 548377 p_0227 TGATGATAA 2 + 1.0 intergenic CCATGTCTCTAATGCAAAGCGACACTCTAGATTAGATGTCGCTTTTTTTGCGCTTTGATGATAAGATAGAA CDS_0567 548253 548516 brie28-concat.gff p_0229 556146 p_0229 TGAAACAAT 2 + 0.97 intergenic TTTCGGCATTTTTAAAATAGAATCACAATTAAAATTATGGCAAAAAATGAGGAAGTGAAACAATGTTAAAA CDS_0575 555945 556441 brie28-concat.gff p_0230 556243 p_0230 TGTAACTCT 1 + 0.99 intergenic TATAAGTTTTTTTAGATTGCACTATCTATTTACTTGCAAAGTTCTGAAAATAGCGTGTAACTCTTGTTGAA CDS_0575 555945 556441 brie28-concat.gff p_0231 560307 p_0231 TGCTATAAT 5 + 1.0 intergenic AAAATCTTAGATTGATTAATAAAAGAGAAAATTAGCTTGAAAAATTACTGTTTCATGCTATAATAACGCAT CDS_0579 560208 560540 brie28-concat.gff p_0232 560876 p_0232 GAAATGGAA 1 + 0.96 intergenic GAAATGGAAAACTTCCTCTCTGATAAAGAAAAACAGTTGAACATTAAGACTAGGAAGTAGTCTGATAGTCA CDS_0580 560767 560921 brie28-concat.gff p_0235 569035 p_0235 TGGTAAAAT 3 - 1.0 intergenic AAAATAAAGTGTTACTAACTATCAGAGTTTTTTTCAAGGCGAAAGCTCTTTTTTATGGTAAAATCACTATA CDS_0586 568985 569307 brie28-concat.gff p_0234 569172 p_0234 TACCTTATT 2 - 0.76 intergenic ATAACTTTGCTTATCTAATTATAGCTGTAAATAATGTTGCTTTTCATTTTTATTTTACCTTATTCTGGTGC CDS_0586 568985 569307 brie28-concat.gff p_0233 569202 p_0233 TAAAATAAA 3 + 1.0 intergenic AGACGTAGTTTTGGTAATCCCATAGCTTTTAGTTCTCATTTGCACCAGAATAAGGTAAAATAAAAATGAAA CDS_0587 568985 569307 brie28-concat.gff p_0236 570249 p_0236 TGTTAGAAT 2 + 1.0 intergenic GATTTAAGTCCATAAAGAGCTGGCAAAGTTTTTCCAAGCTCTTTTTGTCTTTTTTTGTTAGAATGGATTGT CDS_0588 570167 570275 brie28-concat.gff p_0237 572919 p_0237 AGCTTATTT 2 + 1.0 intergenic TTCTCTATCTCTTTGATAGTTTCAACCTATTATCCAAAGATCTTTTATTGTGATAAGCTTATTTTATTACA CDS_0592 572806 572936 brie28-concat.gff p_0239 576891 p_0239 AAGGAAATT 2 - 0.98 intergenic GTGACCTCCAAAATTTTCATCCTTATTATTTTATAAGTTTTCAAAAGAATTTGCAAAGGAAATTGAGAAAG CDS_0596 576827 576965 brie28-concat.gff p_0238 576942 p_0238 TTATAAAAT 3 + 1.0 intergenic GCATAAAGATACCCTATGAGCTTTCTCAATTTCCTTTGCAAATTCTTTTGAAAACTTATAAAATAATAAGG CDS_0597 576827 576965 brie28-concat.gff p_0240 582143 p_0240 ACTATACTA 2 + 1.0 intergenic TATAAAATAATTGTCAGAATTTTGCAACATAACATTGAAATTTTCAATGAAAAGGACTATACTAGAAAGCA CDS_0600 582007 582171 brie28-concat.gff p_0241 583268 p_0241 TAAAATTAA 3 + 1.0 intergenic AAGTAAATAAATGATTATTTTAAAGCTTGCCCTTGCAAGCTTTTCTCTTTTTCGGTAAAATTAAGGACATA CDS_0601 583193 583312 brie28-concat.gff p_0242 583707 p_0242 TCTAAGAAA 2 + 1.0 intergenic GTAAATCCGCTCCTTCGGGTTCGGGGGTTCGAATCCCTCTCTCTCCATGTCTAAGAAACTGAATCGGAATA CDS_0602 583542 583944 brie28-concat.gff p_0243 586701 p_0243 GACTAAAAA 3 + 1.0 intergenic TATTTTTTTGTTATAATAAAAGGAGTGATTAAATTTGTGAAAATGTAATGACTAAAAAGGGTATTTTTTAT CDS_0605 586595 586859 brie28-concat.gff p_0244 586860 p_0244 TTCTTATTA 3 + 0.53 intergenic GATCAAACCTTTTTAAAATTGGTTTTTAAGCAGGCAAATTTTTTAAATGCACTTGTTCTTATTAGTCTCA CDS_0605 586595 586859 brie28-concat.gff p_0245 589098 p_0245 TGATATCAA 2 + 1.0 intergenic CAAATCAATATTTGGAAAATTTTAAAGTTATCAAGGACTCCTTATCTGAAATTGGTGATATCAAAATTGTC CDS_0608 588790 589309 brie28-concat.gff p_0246 590455 p_0246 TAGTATAAT 4 - 1.0 intergenic CTTTGTAAAATTATCCCTAATTCTGCCTAAATCAATAGGAAAATGAGGAGTTTTTTAGTATAATGTAGGAA CDS_0610 590434 590577 brie28-concat.gff p_0247 592928 p_0247 TTCTATTAT 3 + 0.54 intergenic GTTGGGAAAGACCTTTATTTGAAAATATATTGGTCAAAAAAGGTCAAATCTATGATTCTATTATAGCATGC CDS_0612 592835 593076 brie28-concat.gff p_0249 592989 p_0249 TGTATTAAA 3 - 1.0 intergenic ATTCTGAATAATATAAAATATTATATTATATTTATGTATGTTTAACAAGTAATTTTGTATTAAAATTCATT CDS_0611 592835 593076 brie28-concat.gff p_0248 593043 p_0248 AAATATAAT 5 + 1.0 intergenic GGAACACGATTGCTAAAAATGAATTTTAATACAAAATTACTTGTTAAACATACATAAATATAATATAATAT CDS_0612 592835 593076 brie28-concat.gff p_0250 594514 p_0250 AGAGTTTTT 2 + 1.0 intergenic CGGTTTATGCTTGTTTTAATTGCAAAAAAAATGGAGTCACTTCAAAAGTTTTCGTAGAGTTTTTGATTGCT CDS_0614 594355 594624 brie28-concat.gff p_0251 596181 p_0251 TGCTATAAT 5 + 1.0 intergenic TCTTTTCTAGAATCATTCTTGTTTAGGATAATATTACGGAAAAGATGGATAAGTATGCTATAATGATGTCA CDS_0616 596038 596212 brie28-concat.gff p_0252 599082 p_0252 TGATATGAT 2 + 1.0 intergenic GGTCATTTCTTCTTACAATTGTGAGGAATGTATAAAGGTTGCCTAAGAGAAAGTATGATATGATGACATTG CDS_0619 598975 599210 brie28-concat.gff p_0253 599559 p_0253 ATAAAAAAG 3 + 1.0 intergenic GGCAAACACTTTTTACGTTGGTTTTTTTGGAAAAAAGCCATTCCGCCTTATAAAAAAGAATTTTTTCAAGT CDS_0620 599434 599682 brie28-concat.gff p_0254 599985 p_0254 TGAAAATTT 3 + 1.0 intergenic CAGACGAAGTTGGGATAAGTTCCTAGCTTTTTGTGTTTCATCTTAAATGTCTTTTTGAAAATTTTGAAAAT CDS_0621 599873 600045 brie28-concat.gff p_0255 601831 p_0255 TGATAAAAT 4 + 1.0 intergenic TGAGGCAAGTTTTTTTAAATTTCGATATTTTTTTAAGTTTGCTGAAGATGATTTGTGATAAAATATAATAA CDS_0623 601739 601861 brie28-concat.gff p_0256 604759 p_0256 TGTAAAATA 4 + 1.0 intergenic GTTGGTATAGCCAACCCTTTTTGTTTATTGTCATTAGGTTTCTCATTAAAAACTTTGTAAAATAAAAAAGA CDS_0625 604681 604822 brie28-concat.gff p_0257 605701 p_0257 TGATATAAT 5 + 0.97 intergenic GATATTATATAAAAAGCAGACAATTAGGCTTAGGTCTGCTTTTTCTGTGTCCTTGTGATATAATGAATTGA CDS_0627 605618 605838 brie28-concat.gff p_0258 610534 p_0258 TAGAATTAA 3 + 1.0 intergenic CTGCCCCAAGGATAGAAAAGTAACCTTACATGTTGAATCTTAAGGGGTTCTATGGTAGAATTAAAGGGACT CDS_0633 610370 610551 brie28-concat.gff p_0259 613864 p_0259 TGATATAAT 5 + 1.0 intergenic TCATCTAAGACTGACCTGGTATTAGATGATTTTTTTGCTTTTTAGCTTTAAGAAATGATATAATGGAAACA CDS_0636 613785 613939 brie28-concat.gff p_0263 616923 p_0263 TGACAGAAT 2 - 1.0 intergenic GAAAGCAAATGATTTAATGAAAATCCAAAAACAGCTTGCATTTTCCCTATAAAAGTGACAGAATGAGTGTA CDS_0639 616900 617215 brie28-concat.gff p_0260 617017 p_0260 TTTTTTAAT 3 + 0.81 intergenic AGGGAAAATGCAAGCTGTTTTTGGATTTTCATTAAATCATTTGCTTTCATTGAGTTTTTTTAATCTTATAG CDS_0640 616900 617215 brie28-concat.gff p_0262 617106 p_0262 TACAAAAAA 3 - 1.0 intergenic TCACAATAATTATAGCAAAATTTGAAAACACTTTCAAATGTTTTGACTAATCCTTTACAAAAAAATGAAAA CDS_0639 616900 617215 brie28-concat.gff p_0261 617176 p_0261 TGCTATAAT 5 + 1.0 intergenic CTTTTCATTTTTTTGTAAAGGATTAGTCAAAACATTTGAAAGTGTTTTCAAATTTTGCTATAATTATTGTG CDS_0640 616900 617215 brie28-concat.gff p_0265 621023 p_0265 AAAAAATAA 3 - 1.0 intergenic AATTTTCTTGCGATTATCTATTTTTTAATATTTCAATTATTTTTGAAAATCTCAGAAAAAATAAGGCAAAT CDS_0644 620966 621175 brie28-concat.gff p_0264 621066 p_0264 AAAAATAAT 3 + 1.0 intergenic CATTATACAATATTTTGAATTCCTTTTCATTTGCCTTATTTTTTCTGAGATTTTCAAAAATAATTGAAATA CDS_0645 620966 621175 brie28-concat.gff p_0267 625191 p_0267 TGGTATAAT 5 - 0.83 intergenic TGTCAAGGAATATGACACTCTATGACAGTAAATTTTTGAGAGTCATTTTGTTATTTGGTATAATAGCTAAG CDS_0646 625163 625325 brie28-concat.gff p_0266 625325 p_0266 TGATATAAT 5 + 0.95 intergenic CCTTGACATATAGTTGACAAAATCTAGTTACGAAACAGAAATTATAACATTTTTTTGATATAATAGTAGCA CDS_0647 625163 625325 brie28-concat.gff p_0269 639541 p_0269 TGCTATCAT 2 - 0.99 intergenic AATTAAATTTATTGCTGGCTATAAATATTATAGATTTTTCAGAAAAGTTAAACGGTGCTATCATAGGTCCA CDS_0662 639475 639691 brie28-concat.gff p_0268 639625 p_0268 ATTTATATA 3 + 1.0 intergenic GCACCGTTTAACTTTTCTGAAAAATCTATAATATTTATAGCCAGCAATAAATTTAATTTATATATGCTATA CDS_0663 639475 639691 brie28-concat.gff p_0270 643506 p_0270 AGTACAATA 2 + 0.88 intergenic TTAAAAAAAATATGAGATAATTTTCAGTTCTTACTCGCTTTTTTCCCTTGATTACAGTACAATAGACGTCA CDS_0668 643365 643536 brie28-concat.gff p_0271 644359 p_0271 TGTTGTAAA 2 + 1.0 intergenic TAAAAATGATATTAAATTGATTTTTTAAAACATAGATTATAGCGTTTACAAAAGCTGTTGTAAACTTTCAG CDS_0669 644147 644404 brie28-concat.gff p_0273 654359 p_0273 TAGTATAAT 4 - 1.0 intergenic AGGTATGCTTGGGCAGAAAACCTTGTAGATGAAGCGAGATTTTTTGAGCAAGAGGTAGTATAATAAGAGAG CDS_0675 654227 654454 brie28-concat.gff p_0272 654453 p_0272 TGGTATAAT 5 + 0.99 intergenic CTCAAAAAATCTCGCTTCATCTACAAGGTTTTCTGCCCAAGCATACCTCCTATCGTGGTATAATAGAGTTT CDS_0676 654227 654454 brie28-concat.gff p_0274 657449 p_0274 TGATACAAT 2 + 1.0 intergenic AGTGTTAGTCATAGGTCTTTTTTTTGCTTTGCGAACCGCATTGAAAACCTTTTTATGATACAATGAAACTA CDS_0679 657343 657472 brie28-concat.gff p_0275 660627 p_0275 TTTGAAATT 2 + 1.0 intergenic CACTAGTTACAATCTTTTTAATAATACCATAAAAAGTTTATATTGCAAAGTTTTTTTTGAAATTCTAGTAT CDS_0684 660483 660716 brie28-concat.gff p_0276 660634 p_0276 TGATATTTA 3 - 1.0 intergenic ATAGCACAAATTGATTGATTTTTTTAGAACTTTTAGGTTTTGTTAAATCGTATTTTGATATTTAAAAATAG CDS_0683 660483 660716 brie28-concat.gff p_0277 661730 p_0277 CTAAAATCG 2 + 0.14 intergenic TCGGTTGAGAGTTTTCCATTTTCAGGGAACGAAGGATCTATCCTAAAAACTAAAATCGACAATCTTGCAAA CDS_0685 661645 661742 brie28-concat.gff p_0278 664430 p_0278 ACGAATAAA 3 + 0.78 intergenic GGTAAAATTTTGTGGATAACTTTTTGCTAAATCCTGAAATTTTCACAGGAAAAAAACGAATAAAGTTAGTG CDS_0688 664316 664442 brie28-concat.gff p_0280 666085 p_0280 TGATATAAT 5 - 1.0 intergenic CATTAATGATTAAAAAGTCAAAACATTTCGAAACCCTTGCACATCTTCCTCATTGTGATATAATAAAATTG CDS_0689 666027 666223 brie28-concat.gff p_0281 667798 p_0281 ATCAAATAA 3 - 0.99 intergenic TAATGGTATCAATCGCTGATTGGAGCCTTTCTTCTTTTTCAATTTTTTCTATATCATCAAATAATGAAATT CDS_0692 667582 667991 brie28-concat.gff p_0282 671325 p_0282 AACAATATA 3 + 0.74 intergenic TAAACTAAAAACAGTGATTTAACAACGTTTTTAATCTAATTTACTTCATTATGGGAACAATATACTCAACA CDS_0698 671177 671333 brie28-concat.gff p_0283 671825 p_0283 TTGATATAT 3 + 0.86 intergenic CCTATAACTTTATTTTAGATATAGAGAATACAATCATATTCAACTTATAAAATGTTTGATATATCTATCAA CDS_0699 671734 671959 brie28-concat.gff p_0284 671929 p_0284 ATTTAAAAT 3 + 0.38 intergenic GAAGGGTATCTCCCCTTTTTTGTTGCTTATAGTCCGTTGCTAAATAGACATAAATATTTAAAATAAAAACT CDS_0699 671734 671959 brie28-concat.gff p_0285 672860 p_0285 TGTGCTATA 2 + 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_0701 672759 672891 brie28-concat.gff p_0286 675873 p_0286 TACAATATT 3 - 0.99 intergenic CCTTTATTTATCTGACATTTAGTCATTTGTCCTATCTTTAGAGGATGAATTATGATACAATATTAACGACT CDS_0702 675855 675984 brie28-concat.gff p_0287 677849 p_0287 CGGTATAAT 4 + 1.0 intergenic GTCACGAATAATATTTTCCCAATTTTGGTCAAAAATTGAAATAAGAAGGCAAAAACGGTATAATAAAAATG CDS_0707 677704 678029 brie28-concat.gff p_0288 680502 p_0288 TGTTATAAT 5 - 0.99 intergenic TTCAGACACTGGTTTTCTTCTTGCCCAAATTGACTTAGGCGTGTTTGGACAAATGTGTTATAATGGAAAGT CDS_0709 680469 680584 brie28-concat.gff p_0289 681532 p_0289 TATTTAATG 2 - 0.6 intergenic GTAATATATCTCACATAATTTATATGCCGGGTGTTTTGCATTTTTACGCTATTTAATGTAGAATGGGAAGG CDS_0710 681531 681723 brie28-concat.gff p_0291 683028 p_0291 TGAAAAATG 3 - 1.0 intergenic CTCCTTGAAAGTCTTTCTTACTTTGATTTTACTAGAATTTTCAATAAATTGTTAGTGAAAAATGTGATATG CDS_0712 682994 683106 brie28-concat.gff p_0290 683081 p_0290 TAGTAAAAT 3 + 1.0 intergenic ATAAATAATCTCTCTTATCATATCACATTTTTCACTAACAATTTATTGAAAATTCTAGTAAAATCAAAGTA CDS_0713 682994 683106 brie28-concat.gff p_0292 685290 p_0292 TGCTATAAT 5 + 1.0 intergenic CAAGCTGTGTTTTTTTGTTTGAACTTTCTCAAAACTATGAAAGAGACCGTGAAAATGCTATAATGTAAGGG CDS_0718 685208 685318 brie28-concat.gff p_0293 696688 p_0293 CTGTATAAT 4 + 1.0 intergenic TTAATATACCTAATTTCACTATTCTTTATTTTTAATCGTATATTTTGATTAGGACCTGTATAATTAAAGTG CDS_0726 696523 696713 brie28-concat.gff p_0294 697793 p_0294 TGAAAATTT 3 + 1.0 intergenic GCTGGACATCTTGTCCAGTTTTTTGCAAAATGACTTACATTCTACCACTTTTATCTGAAAATTTGATATAC CDS_0727 697714 697865 brie28-concat.gff p_0295 699444 p_0295 TGGCATAAT 3 + 0.98 intergenic TTTTCTTTTTTAATTAAATAAATAAGTATCATACCTAGTCAATTCAACTTATTTCTGGCATAATAGATATA CDS_0729 699326 699444 brie28-concat.gff p_0296 700436 p_0296 TTTACTTTT 2 + 1.0 intergenic TTTTTTAATAAAAGTCAGAAAATTGAAAAATAGCTGACGATTTACAGAAAAACAGTTTACTTTTGTTTTAA CDS_0731 700309 700483 brie28-concat.gff p_0297 704480 p_0297 TGGTAAGAT 2 + 1.0 intergenic AAATGGAGATTTCCAAGATTTTGTAAGCAAAATTTTTGAAAGCTCTATCACTTTATGGTAAGATGGAAAAA CDS_0733 704407 704502 brie28-concat.gff p_0298 705199 p_0298 TAGCTTAAA 2 + 1.0 intergenic TGAGGGTGTTTTTTTGTAATATGGTTGTAAAATCTCCTTGCTTTTTGTACTATTATAGCTTAAACTGTAAT CDS_0734 705107 705204 brie28-concat.gff p_0299 707341 p_0299 TTATAAATA 3 + 1.0 intergenic ACCTAACTATTCGAAAAAAGACAGAAAAAGCGTTTTACTTGTATCTTATTTATAAATATTTTAAAATATAA CDS_0736 707270 707379 brie28-concat.gff p_0301 708537 p_0301 TGCTAAAAT 3 + 1.0 intergenic GTACATAATAATCTATAAAGGTTTTCAAAATTATCTTGTCATGCCTTAAGCTTTTTGCTAAAATATTTCTA CDS_0738 708426 708537 brie28-concat.gff p_0302 709799 p_0302 CATTTTATT 3 + 1.0 intergenic TAAGGGAAGGTAGCACTTTTTTGTTGAAAAACGTTTACAATTATCCAATCTCTGCCATTTTATTGAAAATG CDS_0740 709704 709842 brie28-concat.gff p_0303 712081 p_0303 GGGTAAAAT 2 + 1.0 intergenic ATTGGCTTTTTTCTGTAACTAGAAAATACTACTCCTTGAAATAGCTTGTGATAAAGGGTAAAATGGTTATG CDS_0742 711985 712108 brie28-concat.gff p_0304 720962 p_0304 GGATATAAT 4 + 0.99 intergenic AATGACAATTATAGTTCTTGATATTATCGAAAAATAGTTTACAACTAAATTTTGTGGATATAATGAACAAG CDS_0751 720840 721084 brie28-concat.gff p_0306 726085 p_0306 CTCTATAAT 4 - 1.0 intergenic TACACAATTGTTGGAATAATTTCAATAGCTTTTCACATATTTTCTGAAAAATTGGCTCTATAATTTCTGTA CDS_0755 725982 726211 brie28-concat.gff p_0305 726166 p_0305 TGTGTAAAA 3 + 1.0 intergenic ATAGAGCCAATTTTTCAGAAAATATGTGAAAAGCTATTGAAATTATTCCAACAATTGTGTAAAATGGTAAT CDS_0756 725982 726211 brie28-concat.gff p_0308 730704 p_0308 ATTTTGTTA 2 - 0.73 intergenic AGAATCAATATGTCTTCTCCAAAAGAACGTAGTCGATTCTTGAAATGCCATCAGAATTTTGTTAGGATGTG CDS_0760 730677 730847 brie28-concat.gff p_0307 730831 p_0307 TGAATTAAT 3 + 0.14 intergenic AGACATATTGATTCTTGATAGGTAAGATAAGATTATAAATCATTTTATCTGAATTAATAGAATATTATTTA CDS_0761 730677 730847 brie28-concat.gff p_0309 732060 p_0309 TGATAAAAT 4 + 1.0 intergenic AGACGAACTTTTTTCAAAAATTGTTCGGACTCTCTCCCTTTTGCGCTTAAAATTATGATAAAATAGGTACA CDS_0762 731857 732085 brie28-concat.gff p_0311 747520 p_0311 GTTATTATT 3 - 0.96 intergenic ATGGTGAAATTAATTGACCATTATGGAATAAACATCATCAAAAAGGGAAAGAATCGTTATTATTCTCCTAA CDS_0779 747354 747901 brie28-concat.gff p_0310 747783 p_0310 AATATTATT 3 - 0.98 intergenic TTACTCCCAATCCTTTTTCTAAATTTCTAAAGGTAACCTATGAAAAAATAAGAGCAATATTATTCTATTAT CDS_0779 747354 747901 brie28-concat.gff p_0312 750616 p_0312 TAAAATAAA 3 - 1.0 intergenic CATTTTCTAGAAATCAATCACTACTTCTCTTGATAAAAAATCAACAATTTAATAGTAAAATAAAGTATAAT CDS_0780 750537 750714 brie28-concat.gff p_0314 752491 p_0314 TGGTTAAAA 3 - 1.0 intergenic TTCTTTTAGTTCATATTATTATAACATATATAAAACTATCTGAAAAGTTCATTTTTGGTTAAAATTTTAAG CDS_0781 752432 752579 brie28-concat.gff p_0313 752552 p_0313 TGTTATAAT 5 + 1.0 intergenic AATTCTCTTTCTTAAAATTTTAACCAAAAATGAACTTTTCAGATAGTTTTATATATGTTATAATAATATGA CDS_0782 752432 752579 brie28-concat.gff p_0315 753060 p_0315 TGATAAAAA 4 + 1.0 intergenic ATATTAAAGAAGAAAAAGTAAGATATATCTCTAGACAAAAGTCTAGAGGTTTTTTTGATAAAAATGACCTT CDS_0783 752914 753242 brie28-concat.gff p_0316 753163 p_0316 AGTTTAAAA 3 + 1.0 intergenic ATATCTAATTAAAAATAAGACAACGATACCAGAAATCCTTTATTTTATAGGATATAGTTTAAAACTATATA CDS_0783 752914 753242 brie28-concat.gff p_0318 760397 p_0318 TTTTATTTA 3 - 1.0 intergenic ATTAATAAAAAACGCACTATTTTTTATAAATTGATTTCAAATGTTCGGTTTTTATTTAGCTATAAAAAGTT CDS_0788 760317 760511 brie28-concat.gff p_0317 760474 p_0317 TTTTATTAA 3 + 1.0 intergenic TTATAGCTAAATAAAAACCGAACATTTGAAATCAATTTATAAAAAATAGTGCGTTTTTTATTAATCTTTGT CDS_0789 760317 760511 brie28-concat.gff p_0319 762261 p_0319 GAAAATAAG 2 + 1.0 intergenic TTTCTTTAAAGCAGTGCCTATAGGTGCTGTTTTTTGCTCCATTCTTAAGGAAAATAAGGTAAACTGAGTTT CDS_0790 762181 762522 brie28-concat.gff p_0320 766145 p_0320 TATGATATA 3 - 0.98 intergenic ACTCCAGTAGGAGTTTTTTCTTGTCAAAAAAATATCATAAAAATCCTGCTAACAATATGATATACTCCCCT CDS_0795 766087 766223 brie28-concat.gff p_0323 767509 p_0323 TGTTTTAAA 3 - 1.0 intergenic GTAGCATAACAAAAAAAAGTAATGTCAACAATTTTGTAAAGGTTTATGTTCCTTTTGTTTTAAATCCATCA CDS_0797 767448 767773 brie28-concat.gff p_0321 767583 p_0321 CTTTTTTTT 2 + 1.0 intergenic TGGATTTAAAACAAAAGGAACATAAACCTTTACAAAATTGTTGACATTACTTTTTTTTGTTATGCTACACT CDS_0798 767448 767773 brie28-concat.gff p_0322 767725 p_0322 ACTTAATAT 3 + 1.0 intergenic ATTCCTTCTCATTTATATAGCATTCTCTATAGCATTCTCTTTTTGTTTCTGTTATACTTAATATGATATGA CDS_0798 767448 767773 brie28-concat.gff p_0324 769674 p_0324 TATATTTAT 3 + 0.98 intergenic CCAAAAGAAATTTTAAAAATTATTTCTTAATAAATGAGAGAGCTTGTTTAAGGAGTATATTTATGACAGTT CDS_0803 769593 769709 brie28-concat.gff p_0325 771943 p_0325 TGATATAAT 5 + 0.95 intergenic TAAACTGGGACAATTTTTGTCTCAGCAAAGGGAAGCAGTTTATGATTTCCTTTGCTGATATAATAATTATT CDS_0807 771846 771960 brie28-concat.gff p_0326 776348 p_0326 TGCTATAAT 5 + 1.0 intergenic CAGGCTTTTTCCAATATCAGAATGATGGCTTTGTCTTTTTTTGGTGTCCTGGATATGCTATAATAAGGTCG CDS_0811 776255 776351 brie28-concat.gff p_0327 778960 p_0327 TGATATAAT 5 + 1.0 intergenic TCATAAAAAGATAGTTATTACTAGTGATATAGCTATATAAAGATTTCTCTTTTTCTGATATAATAAACTCA CDS_0812 778837 778982 brie28-concat.gff p_0329 783444 p_0329 CTCTATAAT 4 - 0.98 intergenic TAGCAAAATATTCAGAAAATTGAAACATATATTTTCAAAAAGAAAAGAATTACGGCTCTATAATTTCTGTA CDS_0817 783341 783549 brie28-concat.gff p_0328 783526 p_0328 TGCTATAAT 5 + 1.0 intergenic TAGAGCCGTAATTCTTTTCTTTTTGAAAATATATGTTTCAATTTTCTGAATATTTTGCTATAATAATAACA CDS_0818 783341 783549 brie28-concat.gff p_0330 784054 p_0330 CGTTTTTTA 2 + 0.57 intergenic ATAAATAATTTACGATGTTTGGGAGACACCATCGCTAAAAAAAAACCAGTAATGGCGTTTTTTAGTTCCCT CDS_0819 783929 784104 brie28-concat.gff p_0331 785983 p_0331 AATATTAAA 3 + 1.0 intergenic TCAATAATTTAGATTAGAATTGAAAATATTATTGTTTTTTAAGTAAAATATATAGAATATTAAAGTGTAAA CDS_0822 785909 786029 brie28-concat.gff p_0332 787715 p_0332 TGGTATAAT 5 + 1.0 intergenic CGAGATTAGTCTTGGATTCTTTTACTTTATTGATTGAACGTTTGAGTCTTCAATGTGGTATAATAAAGCCT CDS_0824 787528 787733 brie28-concat.gff p_0333 792482 p_0333 TACTATTAA 3 + 1.0 intergenic CAAGAAAATCAATAAGTTTTAAATAGACCAATTTGACTTTGGTAAGAATAGGTGTTACTATTAAGAGGTAG CDS_0831 792264 792564 brie28-concat.gff p_0334 792836 p_0334 AATTAAAAT 3 + 1.0 intergenic TGAGTTAAAGCATGGGGTGTCCTTTGCTTTTTTATTTATTGCTATTGCAAAAACGAATTAAAATGTTATAC CDS_0832 792764 793044 brie28-concat.gff p_0335 792957 p_0335 TGTTACTAT 2 + 1.0 intergenic CACTACGATATGGATTTTATTAATCAGAGAGTAGCTTGACATTGAGTATAATTAGTGTTACTATGAAGAAG CDS_0832 792764 793044 brie28-concat.gff p_0336 793334 p_0336 TATGATATA 3 + 0.99 intergenic AAAAGCTGGAGTCATGACTTCAGTTTTTTTATATTCAGTTGCAATTATGAGAGAGTATGATATACTTAGCC CDS_0833 793244 793575 brie28-concat.gff p_0337 793445 p_0337 TTAAAATAT 3 + 1.0 intergenic CACTCTAATATAGAGTGGTTTTTTAATGTTTATTAATTAAAATTAATATTTAAAATATTTATATAAAAAAC CDS_0833 793244 793575 brie28-concat.gff p_0338 797082 p_0338 AACTATATA 3 - 1.0 intergenic ATTTCGTAACATTTATAGAATACAAAATTTTTGACTTTTATAGTTTACAGATGTAAACTATATACACATAG CDS_0834 797051 797242 brie28-concat.gff p_0339 805713 p_0339 TGATATTCT 2 - 0.57 intergenic TGAACACAGGCATTCCCGTTTGTGTCTTAATTCTTAAAAAGAATCGAGCAAACTCTGATATTCTTTTTGTG CDS_0843 805689 805825 brie28-concat.gff p_0340 806479 p_0340 TAATATAGA 2 + 0.85 intergenic TATGGTTCTTGTGTATTTTTTTATATCTTGTTTTTTCCCGAAATAAGAGTAATATAGAGCTATGCTTAATT CDS_0845 806076 806519 brie28-concat.gff p_0342 809771 p_0342 AGAAAAAAT 3 - 1.0 intergenic ATCACACTAATTTTATTTTGCAAGTCCCTAAATAAAAAATTGAAATATTTTGAAGAGAAAAAATGATTCGA CDS_0848 809677 809893 brie28-concat.gff p_0341 809839 p_0341 AAAATAAAA 3 + 1.0 intergenic ATATCGAATCATTTTTTCTCTTCAAAATATTTCAATTTTTTATTTAGGGACTTGCAAAATAAAATTAGTGT CDS_0849 809677 809893 brie28-concat.gff p_0344 812149 p_0344 TGTAAAATA 4 + 1.0 intergenic AGAAATTTAGTTTATGTTTTAAATATCAAATAATTTGACAAAATTCCCCAATATGTGTAAAATAAAATTTA CDS_0851 812053 812199 brie28-concat.gff p_0345 815021 p_0345 AGCTATAAT 4 - 1.0 intergenic CCTAGTTTTTGCTGAGAATTAAGGCATAAGTCACCTTTACATCATATTTATAATAAGCTATAATATAGCTA CDS_0855 815001 815158 brie28-concat.gff p_0347 817776 p_0347 TGCTATAAT 5 - 1.0 intergenic AGTTTCCAAAAGACCTTTTAATTGCTTCTTATCCTAAGGAATAATACTTAAAGTATGCTATAATAAGGCT CDS_0858 817777 817984 brie28-concat.gff p_0346 817896 p_0346 TGGAATATA 3 + 1.0 intergenic ATTAAAAGGTCTTTTGGAAACTATACCAATTTTATGCTTGACAATGTTGAATATATGGAATATACTGTCTT CDS_0859 817777 817984 brie28-concat.gff p_0348 819878 p_0348 TAATCTAAA 2 + 1.0 intergenic TTACATTGTAAGGGGGGGTATTTGTTTTTCTTGTTTTCACTCTTGCTTAATTAAGTAATCTAAAGTAGAAT CDS_0860 819792 819910 brie28-concat.gff p_0349 820398 p_0349 TTGTTTTTT 2 + 1.0 intergenic TAGAGAGGGTTCAGTCTCACTCCTTTTAGTATTTTTAAAATCTTATACTATTTTTTTGTTTTTTGGTATAA CDS_0861 820239 820433 brie28-concat.gff p_0350 822655 p_0350 AGTTATAAT 4 + 1.0 intergenic CAACATTCTAGAAAGAATGTTGTTATTTTTTGTGAAAAACACTTGAAATATAACAAGTTATAATTTATACT CDS_0864 822576 822755 brie28-concat.gff p_0351 824239 p_0351 AAAAATTTA 3 + 1.0 intergenic ACAAAGGACATATTAGAAATTAGTTTGGAGGTTGAAAAACATAGATGAAGAAGAGAAAAATTTATGATGAT CDS_0866 823860 824309 brie28-concat.gff p_0352 831065 p_0352 TGCTATAAT 5 - 0.97 intergenic TGGTTGTCGGTGGGAGGTTTTTTTTGGCTCTCGCTAACACGTGTAAGGTGTTCAATGCTATAATTAAGAGA CDS_0873 831041 831264 brie28-concat.gff p_0354 832923 p_0354 TAAGTAAAA 3 - 1.0 intergenic CCAATCCCCCTCCTTTTTTCCCTATTTTACAAAAAAAGTGACAAAATTGTAAAGATAAGTAAAAGACTTAC CDS_0874 832847 832995 brie28-concat.gff p_0353 832979 p_0353 TGTAAAATA 4 + 1.0 intergenic TTTATACGAGAAACTGTAAGTCTTTTACTTATCTTTACAATTTTGTCACTTTTTTTGTAAAATAGGGAAAA CDS_0875 832847 832995 brie28-concat.gff p_0355 835765 p_0355 TGTAATATA 4 + 0.06 intergenic CTAGAGCTTATGGCTCTAGTTTTTTTATGGCATATTGACATATAGGTATATACAATGTAATATACTATTGT CDS_0878 835687 835789 brie28-concat.gff p_0357 837738 p_0357 ATTTTAAAT 3 + 1.0 intergenic CTAAATCTGTTATAATATAACTAAAGCAAAGCCAATGATTTGGCTTTTTTTAAAGATTTTAAATGATATTT CDS_0881 837639 837767 brie28-concat.gff p_0358 841288 p_0358 ATCATGTTA 2 + 1.0 intergenic CAAACTTCTCCTATAGAGAAAAAGTTTCTTATTGACAGTTAAAGAAAAGGACGGTATCATGTTAGTTGCTT CDS_0885 841213 841381 brie28-concat.gff p_0359 843598 p_0359 AAAAAAACT 2 + 1.0 intergenic AAGAAAGCTATCCCAAGTTTTTGCCTTGGGATAGCTTTTGTATTTTGTCAAAAAAACTGATACTTTCCTTA CDS_0886 843525 843642 brie28-concat.gff p_0360 849351 p_0360 TGATAAAAT 4 + 1.0 intergenic TGTGGATATAGTTTTAGACTATATAAGGTTTAGCTCTGCAAAATGATACTTCTTATGATAAAATGGAAAGA CDS_0891 849046 849372 brie28-concat.gff p_0361 850148 p_0361 TGATAAAAT 4 + 1.0 intergenic TAGATATTGTTTATCAGTTAATAAAAAATCTGTAATTTACACTGCTTCATTCTAATGATAAAATAATTTCC CDS_0893 850077 850175 brie28-concat.gff p_0362 851204 p_0362 TTTCATAAA 3 + 1.0 intergenic AGGTGGTCTTATTTGTTTTCAGAAAAGTTTGATAATTAATTGACAACGTTTTCATAAAGGGGTAGAATCTT CDS_0894 850978 851327 brie28-concat.gff p_0363 851926 p_0363 TGGTAAAAT 3 + 0.99 intergenic CTTATGCACCAGGTATCGTTAAGACTCCAATGATGTTTGACATTGCCCACGAAATTGGTAAAATGCTGGTA CDS_0895 851668 851944 brie28-concat.gff p_0364 852429 p_0364 TTGTATAAT 4 + 1.0 intergenic AGGACTAAATGCAGTCATAAAGCAGATATTAGAGATAGGCAAATGCCTGTCTTTTTTGTATAATAGGAGGT CDS_0897 852264 852478 brie28-concat.gff p_0365 854413 p_0365 AGGATTTAT 2 + 0.05 intergenic TTAGTAAAAAGTTATGATAAAGAGGATTTTAAAATTTACCTTCTCAAAGTGTGGAAGGATTTATGCTACGA CDS_0898 854310 854717 brie28-concat.gff p_0366 855412 p_0366 TGATATAAT 5 - 1.0 intergenic CTTTCCGACGAGCGGAAGGCCTTTCTTTCATTTATTTCCCTTTTGAGGGATTATTTGATATAATTATAGCA CDS_0899 855361 855497 brie28-concat.gff p_0367 855908 p_0367 AACGAAAAT 2 + 0.75 intergenic TCCTTTAAGAAAAAAACAAATAAAACACCATCTAAGGAATTGAAGAAAGCTATCAAACGAAAATCGAACTA CDS_0901 855781 856039 brie28-concat.gff p_0368 856018 p_0368 TGGATATTG 2 + 0.9 intergenic AGTTTTAAGGGCTGAAAAAGATTCAACCTTTAAAACTGGACTGTAAAGTTTAGTATGGATATTGACTATAT CDS_0901 855781 856039 brie28-concat.gff p_0369 856657 p_0369 TGATATAAT 5 + 1.0 intergenic AAGATAGCTAAAAAACTTTCTTTATTCATAGAAATTAACCTCCTATCTCACTATATGATATAATACTTTTA CDS_0903 856582 856702 brie28-concat.gff p_0370 861987 p_0370 TGCTATAAT 5 + 1.0 intergenic TTGTCTTTTTTTAGTCACCTAGTCTGCCTTTTTTCACAAGATTGTCTGAAAACTGTGCTATAATGATAACA CDS_0909 861846 862100 brie28-concat.gff p_0371 869843 p_0371 TGATAAAAT 4 + 0.93 intergenic GAGTCTACCTTTAAGAGTTATTTTGATACCAAGTTCCCTAAAGTGATCCTTTTCATGATAAAATAGAACAA CDS_0919 869752 869864 brie28-concat.gff p_0372 871032 p_0372 TGTATACTA 2 + 0.99 intergenic CTATTGTTTGAAAGTAATTTGGAGGGCATGATGTGAGCTAAAGCTTGCCTAAAAGTGTATACTAACTATAA CDS_0921 870958 871055 brie28-concat.gff p_0373 873357 p_0373 TTAAATAAA 3 + 0.45 intergenic TGAAGAGAAGTAAAAGAACGAATCCAATTTCATCTGACATTTCATGTAAAGAATGTTAAATAAAGATAAGA CDS_0925 873213 873424 brie28-concat.gff p_0374 874210 p_0374 AATCCTTTT 1 + 0.7 intergenic GAAGAAAAGTTATAAATTCTATTTATTTGTTATTATCAAGAATCTTCATTCTCACAATCCTTTTAAAAACT CDS_0927 874127 874473 brie28-concat.gff p_0375 874453 p_0375 TGATATAAT 5 + 1.0 intergenic TTTCTTGATTATAAGCTAATAGATTTTATGAAATCATATAATCAGTTTGAATTTTTGATATAATAATTCTT CDS_0927 874127 874473 brie28-concat.gff p_0376 875956 p_0376 TGATATAAT 5 - 1.0 intergenic GTCTTCTCTTTGAAAGTCTGACTTGTATTGTTTGACTTTGCATTTTGTCCTATCATGATATAATAAACAAA CDS_0928 875934 876213 brie28-concat.gff p_0378 880630 p_0378 ATTTATAAT 5 - 1.0 intergenic ATTTGAAGAATTTTGATATGTTTTAGCTACTTATGTCATACCATTTTTTATGATAATTTATAATAGATTAA CDS_0934 880501 880852 brie28-concat.gff p_0377 880745 p_0377 TATCATTTA 2 + 1.0 intergenic GCTAAAACATATCAAAATTCTTCAAATATTCTTTTGAATTATATTCTAGTTATGGTATCATTTAATACGCT CDS_0935 880501 880852 brie28-concat.gff p_0379 881604 p_0379 TGCTATAAT 5 + 1.0 intergenic GTCTTTTTTCGTGCTCAAAGTCCAATTTTTATAATTTGTTTCCTGCTTCTAAAACTGCTATAATTTAAGGA CDS_0936 881376 881643 brie28-concat.gff p_0380 882322 p_0380 CGGTTATAA 2 + 1.0 intergenic CTTAAATTTATAAGCTTTGGTTTTTTCTTTTCTTCTTTGACATCCGTCTTGAAAACGGTTATAATAATCAC CDS_0937 882191 882337 brie28-concat.gff p_0381 884318 p_0381 TGATATAAT 5 + 1.0 intergenic TAGGGCTTCATTTTTTAGATAAGACATTAGAATATATTGATGATTAGAATTGTGGTGATATAATATATGTC CDS_0939 884202 884341 brie28-concat.gff p_0382 886012 p_0382 AGACTAAAA 2 + 1.0 intergenic GGGGACTTTTTTGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATT CDS_0942 885673 886084 brie28-concat.gff p_0383 894394 p_0383 TATAGAAAA 2 + 0.07 intergenic TTTCAAAAATACCTGATTTCTTAAGAAAAATAGAAAGAATTGGGTTATAATAAACTATAGAAAACGCTTTA CDS_0950 894321 894410 brie28-concat.gff p_0387 897259 p_0387 CATAAAATA 3 - 1.0 intergenic TGATATTATTTTGATACTAAATTGGGTAAATAATTTGTATTTTACACCATTTTAGCATAAAATAGAAGGAT CDS_0953 897189 897615 brie28-concat.gff p_0384 897289 p_0384 TGCTAAAAT 3 + 1.0 intergenic ATTATTGAATTAACAACGTTACAAACATATTTATTAAAAATATCCTTCTATTTTATGCTAAAATGGTGTAA CDS_0954 897189 897615 brie28-concat.gff p_0386 897473 p_0386 CTATTATTA 3 - 0.65 intergenic TGGATTTCATTTGACAACAGGAACCCTTGAAACTGTTTTGTCAGCTAAACCAAGGCTATTATTAGCCTTGG CDS_0953 897189 897615 brie28-concat.gff p_0385 897584 p_0385 TGTGCTATA 2 + 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_0954 897189 897615 brie28-concat.gff p_0388 900538 p_0388 TGCTATTCT 2 + 0.46 intergenic GGTCTGCATACACCATAGGAATCTCAGTTTTGAGCTTTATCATTGGAAACTTTTTTGCTATTCTTCTTGCC CDS_0958 900358 900542 brie28-concat.gff p_0389 901174 p_0389 TGATATAAA 4 + 1.0 intergenic TTATCACAATATTTAGAATTATTTAATATTTCAACCGCTTACATACATATAATTATGATATAAATTAACGA CDS_0960 901068 901182 brie28-concat.gff p_0390 904478 p_0390 AAATATAAT 5 - 1.0 intergenic AATTTATGTAAAAAGATAGATTGCTATCTCTTTATTTTAAATTAAATTATTACAGAAATATAATTATGTTA CDS_0964 904443 904559 brie28-concat.gff p_0391 905967 p_0391 AATGAAATT 2 - 1.0 intergenic TTTTTCTTGCCTTTAAAGGTAACCAATCCTTGCTACTACTGCTCATTTGAGTTACAATGAAATTAAATCAT CDS_0965 905929 906058 brie28-concat.gff p_0394 907649 p_0394 TTTCGATAT 2 - 1.0 intergenic AATATTCGGATTTTTTACGTATATAATAAAATTATATGTTGACAGCGTTCGGTTTTTTCGATATGATGGAA CDS_0966 907401 907917 brie28-concat.gff p_0393 907833 p_0393 TTCGTAATA 2 - 0.88 intergenic TCTCAAAAATAAGCTCTACTATTTTATCATTTTTTAGATGAAAATGCAGAGTCTATTCGTAATAGAAAAAA CDS_0966 907401 907917 brie28-concat.gff p_0392 907891 p_0392 TGATAAAAT 4 + 1.0 intergenic TTCACTCAATTATTTTTTTCTATTACGAATAGACTCTGCATTTTCATCTAAAAAATGATAAAATAGTAGAG CDS_0967 907401 907917 brie28-concat.gff p_0395 910325 p_0395 TAGAATGAA 2 + 0.99 intergenic CCCTCCCTATCACATTGATAAAAAATTTCTATTAGACAGCTAGATTTTCTAGGTGTAGAATGAAGGCAACT CDS_0968 910226 910347 brie28-concat.gff p_0396 913083 p_0396 TGCTATTAT 3 + 1.0 intergenic TAGGTCTCTTTTTTTGCCTTTATTACAGTTTTCACTTGCAAAAGTATTAGCTTCTTGCTATTATTGTATAG CDS_0972 913002 913125 brie28-concat.gff p_0397 915420 p_0397 TGATATAAT 5 + 1.0 intergenic AGAGATGTTGTTCTCTGCCTCTTTATGTTTCTACCTAGCTCTTTAGGATTGCTTTTGATATAATTAAAAGT CDS_0974 915299 915460 brie28-concat.gff p_0398 929114 p_0398 TGTGATATA 3 - 1.0 intergenic ACACCTCATAACATCTTTCCGAAAAACTGTAATTTTCTTGAAAGAAATATAAGGGTGTGATATACTTCTAT CDS_0987 929080 929195 brie28-concat.gff p_0400 930378 p_0400 TACTATTAT 3 - 1.0 intergenic CAGTCTTTTACAAAACCTACAAAATTACTTTATCATCCCTAACTCCCATGTTTTTTACTATTATATCATGA CDS_0989 930294 930477 brie28-concat.gff p_0399 930397 p_0399 TGATATAAT 5 + 1.0 intergenic ATAATGGAAAACGGTGACAAAGTACACGAAGATGGCTTGATAGCAATTATTTTCATGATATAATAGTAAAA CDS_0990 930294 930477 brie28-concat.gff p_0401 935425 p_0401 CATTATAAT 4 - 0.74 intergenic CAATCGTTTTTCAGAAAATCCAGAGCACTAAATTCTTGACACGTGCAACCGTTTGCATTATAATCGCTAGT CDS_0993 935399 935583 brie28-concat.gff p_0403 936599 p_0403 AAGAAATAT 3 - 0.9 intergenic AAGTGTTTTGTTTATAATTATTTTTTTATAATTATTCTTGTATTTTACGACTATAAAGAAATATTTATGAG CDS_0994 936584 936733 brie28-concat.gff p_0402 936667 p_0402 AAAAATAAT 3 + 1.0 intergenic ATTCTCATAAATATTTCTTTATAGTCGTAAAATACAAGAATAATTATAAAAAAATAATTATAAACAAAACA CDS_0995 936584 936733 brie28-concat.gff p_0405 947751 p_0405 TTATATAAT 5 - 1.0 intergenic TTATAAACAACGTTGTTTTTTTATACTTATTCTTAACTATATTTTAGAATGATTCTTATATAATTATAAAG CDS_1008 947622 948121 brie28-concat.gff p_0404 947884 p_0404 TTTTAAAAA 3 - 1.0 intergenic ATGTTTCAAAGAAACTAAAATAAGTCTCTTCTTTGAATTTTCAAAAACAAAAAATTTTTAAAAACAAATTA CDS_1008 947622 948121 brie28-concat.gff p_0406 950563 p_0406 TGTAAAATA 4 + 0.62 intergenic GTTTAGTTAATCAACAAGGGATATAATCTCAAATATTGTATTGTAGTCCTGGTAGTGTAAAATAAGTTGTG CDS_1011 950188 950632 brie28-concat.gff p_0407 952088 p_0407 AATGATATT 2 + 1.0 intergenic TCAATCAATCATAACTATCTCCATCTTTCATGTAAATATAAAGGGTTTATGGTACAATGATATTGATATAC CDS_1013 951797 952102 brie28-concat.gff p_0408 953498 p_0408 TGTGCTATA 2 - 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_1015 953468 953600 brie28-concat.gff p_0410 958461 p_0410 TGGATATTA 3 - 1.0 intergenic GGAAGTCTAAATATGGAGAAAGTTTCAAAAATTTTGCCGATTTTGATTTTAGTGATGGATATTATCATTAT CDS_1020 958348 958602 brie28-concat.gff p_0409 958539 p_0409 CATATTTAG 2 + 1.0 intergenic TAATATCCATCACTAAAATCAAAATCGGCAAAATTTTTGAAACTTTCTCCATATTTAGACTTCCTTTCAAT CDS_1021 958348 958602 brie28-concat.gff p_0413 960982 p_0413 CTCTATAAT 4 - 0.87 intergenic TGTGTTGTTCTGCTTGAAAAATTGAGAGACTTTGAAACAAGATAAATAGTAAAGGCTCTATAATTTCTGTA CDS_1022 960879 961364 brie28-concat.gff p_0412 961103 p_0412 TAGTATAAA 3 - 0.99 intergenic TGTATAATAGCAAACTAGAAAAAATGACTACTAATTTAAAATTTGCTTAGTATGATAGTATAAAGTTAGTC CDS_1022 960879 961364 brie28-concat.gff p_0411 961183 p_0411 ACTGATTTA 2 - 1.0 intergenic CAAATTTTCCTCCCAAAATGTGTCCAAAATATTGACAGAATTCCAAAATAGAGATACTGATTTAGCACAGT CDS_1022 960879 961364 brie28-concat.gff p_0414 962218 p_0414 TTGTAGAAT 2 - 0.99 intergenic TTTCTGTCTTATTTAGAAAACTTTTAATAATGACTTTTCCATGAGAGTTTTTCTATTGTAGAATGGTTAAA CDS_1024 962189 962467 brie28-concat.gff p_0415 967957 p_0415 TATCCTATA 2 - 0.98 intergenic ATGTAAGGCTTTTCATTTTTTAAGCATATTTCTTGCTCATTAAGTTTTTTTAACCTATCCTATACGTATAT CDS_1028 967932 968422 brie28-concat.gff p_0416 969599 p_0416 AAAAAATTC 2 - 1.0 intergenic TTTTTGGTCTTGCACCTGCTTTTTTAGCCATTAAAGGGGGCAAAGATGAAAAAAATTCTTTTGTTTCTGAT CDS_1031 969507 969699 brie28-concat.gff p_0418 971665 p_0418 TGGTATAAT 5 - 1.0 intergenic GAAACAGCTATCACATACTATTTTTCAGTATTTTCCGAATATTATCTACAAAATGTGGTATAATTTAGTGT CDS_1033 971640 971854 brie28-concat.gff p_0417 971828 p_0417 TGCTATAAT 5 + 1.0 intergenic AAGACGATTCATATTAACATCAAGGTATTACAGGCTTTAAGTAACTATTCTTTTGTGCTATAATAAATTAT CDS_1034 971640 971854 brie28-concat.gff p_0419 973135 p_0419 TGTATTAAA 3 + 1.0 intergenic TGTTTTTTTGTTATCAAAAGTATGTGATTTTTAAACCACTATAGATTCTAAAAAATGTATTAAAATATAAA CDS_1035 973050 973323 brie28-concat.gff p_0420 978143 p_0420 TAGTATTAT 3 - 1.0 intergenic TTAGTATTTCAATACAATATTATTAATAAAGATTCCAGCTATTTGAATAAAGTTATAGTATTATGATACTA CDS_1041 978000 978254 brie28-concat.gff p_0424 983490 p_0424 TAATTTATT 3 - 0.84 intergenic GTTCTTTTCTTATTAAAATTCTCAAAAACATTTACATTCAATGTTCATAAACCCGTAATTTATTCTATGTT CDS_1049 983385 983824 brie28-concat.gff p_0422 983600 p_0422 ATTTTGTAT 2 + 1.0 intergenic AATGTTTTTGAGAATTTTAATAAGAAAAGAACATTGACCTAAGAAGATGTATTCCATTTTGTATCCATTTA CDS_1050 983385 983824 brie28-concat.gff p_0423 983622 p_0423 TTTTAAAAA 3 - 1.0 intergenic AGAACCTTGATATTAATATTTTTACCATTTTTTATAAATTCATTTTACCTTAAATTTTTAAAAAAAGATAG CDS_1049 983385 983824 brie28-concat.gff p_0427 985654 p_0427 TACAATCTA 2 - 0.54 intergenic AGGCAAACAATTCAAAAAAGACGTCATTATTGTCTCTGTTGGTTACTACCTGCGTTACAATCTAAGCTATC CDS_1051 985517 985937 brie28-concat.gff p_0426 985839 p_0426 TGAATTTAA 3 - 1.0 intergenic TTTTCTTGATGAGATTAACCCTATTTTAACATATTTTAAAACTGTCATGTTTTTATGAATTTAAAATAAAT CDS_1051 985517 985937 brie28-concat.gff p_0425 985855 p_0425 ATTTATTTT 3 + 1.0 intergenic ATTTTTTGGAAAACTTTGCAACAGAACCAACTGGTGAATTTTTATTTTCTTTAACATTTATTTTAAATTCA CDS_1052 985517 985937 brie28-concat.gff p_0428 992503 p_0428 TTGAATGAA 2 - 0.74 intergenic GGCAAAGGTTTGCGATTGATCAGATGTTAAAGCAAATTAAAACAATTTATTTAGCTTGAATGAAGAAAGAG CDS_1058 992494 992687 brie28-concat.gff p_0430 1000077 p_0430 ACTTATAAT 4 - 1.0 intergenic ATAAGTTAAAATTTTTCAAACTACTAGAAAAAATAAAAATATTTGGAAGAAGAAGACTTATAATAAATAGG CDS_1066 999866 1000212 brie28-concat.gff p_0431 1005704 p_0431 TATTATATA 3 - 0.96 intergenic TTTCTTTTAAATTGTAAATGAATAAAGTAACCTAATAGTGATGTTATCACTAGATTATTATATAGAAAGAA CDS_1074 1005662 1005788 brie28-concat.gff p_0434 1007325 p_0434 TATGATAAA 3 - 1.0 intergenic ATCTAAAATGCAATACGATAAAGATTTACAATAAAACTAAGCTAAGAAAGTACAGTATGATAAAGATAAAG CDS_1076 1007255 1007716 brie28-concat.gff p_0433 1007496 p_0433 GAATATAAT 4 - 0.8 intergenic AAAAGATATAGCTAAATATCAAGCTGATAAAAAAACTTATGATGCAGTATTGTAAGAATATAATAATCAAA CDS_1076 1007255 1007716 brie28-concat.gff p_0432 1007641 p_0432 AAGTATGAT 2 - 1.0 intergenic AAAGTAAAAGAAGACCACAAAAAAAGATTTAGCTAAGTATGATAAAGCAAAGGCTAAGTATGATGCTAAAG CDS_1076 1007255 1007716 brie28-concat.gff p_0437 1008146 p_0437 TAGGCTTTA 1 - 0.72 intergenic TGAAAAATTTCGAAAACATCAATACAATTACTATTGGCAGAAAATTTAACGGTGTTAGGCTTTAGTTGTTA CDS_1077 1008132 1008321 brie28-concat.gff p_0436 1008234 p_0436 AATAAATTA 3 - 1.0 intergenic ATTTTAAGAGGAGGTAACATATAAAATTAAGATAGCTATTTTTAGACTAAATAAATTATTATGCTATGATT CDS_1077 1008132 1008321 brie28-concat.gff p_0435 1008288 p_0435 ATCTTAATT 3 + 0.99 intergenic TTTGTCATCTTGTTTCTAATCATAGCATAATAATTTATTTAGTCTAAAAATAGCTATCTTAATTTTATATG CDS_1078 1008132 1008321 brie28-concat.gff p_0441 1010543 p_0441 TGCTAAAAT 3 - 1.0 intergenic CCTGTTTGCATTTTAAATTTAGCATATTCAAAGAGTTGAAAACCCTTACTAAAAATGCTAAAATAGTGCTA CDS_1080 1010519 1010750 brie28-concat.gff p_0438 1010612 p_0438 ATTTAAAAT 3 + 0.98 intergenic GTTAGCACTATTTTAGCATTTTTAGTAAGGGTTTTCAACTCTTTGAATATGCTAAATTTAAAATGCAAACA CDS_1081 1010519 1010750 brie28-concat.gff p_0440 1010644 p_0440 ACTATGAAT 2 - 0.99 intergenic AGCACTAATTAAGATAAGATTCTAAAGTTTTTGGAAATTCTCGAAATAATGCTAGACTATGAATTAATTTG CDS_1080 1010519 1010750 brie28-concat.gff p_0439 1010727 p_0439 TGCTATAAT 5 + 1.0 intergenic TAGTCTAGCATTATTTCGAGAATTTCCAAAAACTTTAGAATCTTATCTTAATTAGTGCTATAATAGGACTA CDS_1081 1010519 1010750 brie28-concat.gff p_0442 1017743 p_0442 TGTTATAAT 5 - 1.0 intergenic GAAAAAGGGGAGCGCGAATCTTACTCAACTTCCTCTTTTTTTATTTGTCTATTTATGTTATAATTTTATTA CDS_1094 1017724 1017847 brie28-concat.gff p_0443 1020759 p_0443 TGGTATAAT 5 - 1.0 intergenic GATTTCCACTTATATCTCAAAATCATGGCTCAAAGCCCAAAATCAATCCTAGATTTGGTATAATGTTTAAA CDS_1097 1020737 1020893 brie28-concat.gff p_0444 1023645 p_0444 TGAAAATCA 2 - 0.71 intergenic TATAAAATGGAGGAAACCTATCCATGGAAGTGGCAGAAATTCGCCAAAAAATCTCTGAAAATCAAGAGAAG CDS_1100 1023575 1023746 brie28-concat.gff p_0445 1026611 p_0445 GTTTATAAT 4 - 1.0 intergenic AGAGACAATGGTCTTTGGCTTTTTCTTATCACATCTTGAATTCATTAGCTGTCTTGTTTATAATGAAAGGA CDS_1103 1026585 1026694 brie28-concat.gff p_0446 1030794 p_0446 TGCGGATAA 2 - 1.0 intergenic CAGCCTTTTTCCTTTTATTATCAAAATGGAGGTTGCTTGGTTTATTAACGGTTTATGCGGATAATGAAGAT CDS_1106 1030439 1030883 brie28-concat.gff p_0449 1031034 p_0449 TGATTTTTA 3 - 1.0 intergenic AACAGATCAAAGCTCAATCTTAAAGAAAAACCACCTTAACTAAGAATTGCTCAAATGATTTTTAATTGGTA CDS_1107 1031002 1031210 brie28-concat.gff p_0448 1031115 p_0448 AAAAATAAT 3 - 0.1 intergenic TAATTTCCCTTCTATTTTACTAAAATTTATCCGCTTTGTCATAGTTCTTCCTAAGAAAAATAATAGTGATG CDS_1107 1031002 1031210 brie28-concat.gff p_0447 1031180 p_0447 TAGTAAAAT 3 + 1.0 intergenic ATGACTCATCACTATTATTTTTCTTAGGAAGAACTATGACAAAGCGGATAAATTTTAGTAAAATAGAAGGG CDS_1108 1031002 1031210 brie28-concat.gff p_0453 1036626 p_0453 TGGTATAAT 5 - 0.94 intergenic AGCTTATATATCAGCCACAAAGACATACTCGAAACTTGGTCCTTGACCTATTTTTTGGTATAATATGTTTG CDS_1113 1036566 1037098 brie28-concat.gff p_0450 1036656 p_0450 CAAAAAATA 3 + 0.61 intergenic TCTTAAGTCATTCAATTAGTAAAGCCAAAAACTTTACATATCAAACATATTATACCAAAAAATAGGTCAAG CDS_1114 1036566 1037098 brie28-concat.gff p_0452 1036962 p_0452 TATGATATA 3 - 1.0 intergenic ATAAGATGAGTTTAAAGTCAAAAAATACGAATATTTTTGCGAAATGTTCGGTTTTTATGATATAGTTAACT CDS_1113 1036566 1037098 brie28-concat.gff p_0451 1037048 p_0451 TGCTAAACT 2 + 1.0 intergenic AAAAACCGAACATTTCGCAAAAATATTCGTATTTTTTGACTTTAAACTCATCTTATGCTAAACTAAAAAAT CDS_1114 1036566 1037098 brie28-concat.gff p_0454 1042868 p_0454 TGGTATAAT 5 - 0.88 intergenic GATTATAGGTTTAGAACTGTCTCACCCTCTTTTTATGTTTTAGACTAGCTTTCTATGGTATAATGAAATC CDS_1121 1042869 1043057 brie28-concat.gff p_0456 1046925 p_0456 TGATATAAT 5 - 1.0 intergenic TAAAATATTGATAAGATTTGATAATTAATAACTATGTGACTAGACAAGAAAAAAGTGATATAATGAAACTT CDS_1124 1046755 1047036 brie28-concat.gff p_0455 1047034 p_0455 TGTATTATA 3 + 1.0 intergenic AGTTATTAATTATCAAATCTTATCAATATTTTATGGCGAGCAATTTACTGTTTTTTGTATTATACTTAGAA CDS_1125 1046755 1047036 brie28-concat.gff p_0457 1056759 p_0457 ATTTATTAT 3 - 0.95 intergenic TTTTTAGGATATTTACGGCATTTATTTTCTGAAAAAGTATGATATAATATAGCTAATTTATTATTTTGGAG CDS_1136 1056753 1056839 brie28-concat.gff p_0458 1057963 p_0458 TGATATACT 2 - 1.0 intergenic AAGAGATGATAAAAGCTTAAAGTGATATTTTTTACTTTCTAGAATGATTAGAGCATGATATACTAGGGGAA CDS_1138 1057941 1058061 brie28-concat.gff p_0459 1058851 p_0459 TATCATTAA 2 - 0.54 intergenic GAAAGTCTCACAAGACTATTTTGAAAAAGAAAAAGCTGGGCTATCCCAGCTTTTCTATCATTAAGAAAGGA CDS_1139 1058843 1058968 brie28-concat.gff p_0460 1063507 p_0460 TTTTATAAA 3 - 1.0 intergenic AAAAATGATAAAAAAACCAGAAGCTATCTTCTGGTTTTTTCTTCTTTAAAAGTTTTTTTATAAATTAAGAA CDS_1143 1063445 1063581 brie28-concat.gff p_0461 1065926 p_0461 ACATTTTAT 3 - 1.0 intergenic AGTACTTTTGAAATTTGTTAAAGCTCCTAAAAACTTTCAAAAAGATAATGAAGAGACATTTTATGAAGTTA CDS_1149 1065629 1066039 brie28-concat.gff p_0462 1066245 p_0462 TGGAAAATA 3 - 0.99 intergenic GTGAGGATCTTCTTTTTTTAGTTTTATATTCTATTTAACTATAAAATTTATCTAGTGGAAAATACTATATA CDS_1150 1066221 1066348 brie28-concat.gff p_0463 1068954 p_0463 TGTTAAATA 4 - 1.0 intergenic CGATAAAACTTTTCAAATTTAAAGCCATTTATAATTCTTTGTGTTATAATGAAAATGTTAAATATATAAAA CDS_1152 1068939 1069034 brie28-concat.gff p_0464 1072155 p_0464 AAAAAATAA 3 - 1.0 intergenic TACTATTTGAATAGATTTCTTTAATTTTTTCTAGAAACCTAAATTATTATTTGACAAAAAATAATGTTGAA CDS_1153 1072144 1072297 brie28-concat.gff p_0467 1078116 p_0467 TTTTTACTA 2 - 0.8 intergenic TGGTTTACCAAGCGGGAGTTCAAAACATCTCGCTTGGGTTTCCGAGTGAGATGTTTTTTTACTACTATTGT CDS_1159 1078090 1078435 brie28-concat.gff p_0466 1078356 p_0466 TCTGAAAAA 2 - 1.0 intergenic AAAGTAGATATTAAGAACAATTAGAAAAGTTGACTTTGGTCAGCTTTTTTGTTTTTCTGAAAAAATATAAA CDS_1159 1078090 1078435 brie28-concat.gff p_0468 1079176 p_0468 ATGTTTTTT 2 - 1.0 intergenic AAAGGAAAGGAACAGTAGAATTTTACAGAATTTTGATATTTTGCTAGCTTTTTCAATGTTTTTTGGGTAGA CDS_1160 1079127 1079268 brie28-concat.gff p_0472 1080251 p_0472 TGTGCTATA 2 - 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_1161 1080221 1080628 brie28-concat.gff p_0469 1080362 p_0469 CTATTATTA 3 + 0.65 intergenic TGGATTTCATTTGACAACAGGAACCCTTGAAACTGTTTTGTCAGCTAAACCAAGGCTATTATTAGCCTTGG CDS_1162 1080221 1080628 brie28-concat.gff p_0471 1080521 p_0471 AAGGTATAA 2 - 0.99 intergenic CTATTTTCATTTCATTCTAGCATGAAAGAAGGCTTAAAACAAGGAAATAATGGATAAGGTATAAGCTTCTG CDS_1161 1080221 1080628 brie28-concat.gff p_0470 1080586 p_0470 TGCTAGAAT 2 + 1.0 intergenic TTAAGTCAGAAGCTTATACCTTATCCATTATTTCCTTGTTTTAAGCCTTCTTTCATGCTAGAATGAAATGA CDS_1162 1080221 1080628 brie28-concat.gff p_0473 1082215 p_0473 TAAGATAAT 3 - 1.0 intergenic TACAAAAAAGCGATGAAATTAGCGTTTATTACTTGACCTCATAAGGCTTTTAGGATAAGATAATACTTGTT CDS_1164 1082165 1082302 brie28-concat.gff p_0474 1090089 p_0474 TGGTATAAT 5 - 1.0 intergenic ATCATGTTAAAGCACTAGCCAATAGTGGTTGAGACTGTCTTTTGACAGTCTTTTTTGGTATAATTTAAGAT CDS_1173 1089976 1090165 brie28-concat.gff p_0476 1090529 p_0476 ATAGTAATA 3 - 0.96 intergenic ATTGGAGGAATTGCTTTAATTGCAGTGCTCATCCCTTTACTTACTTTAGTGTGGTATAGTAATAACCAAAA CDS_1175 1090511 1090812 brie28-concat.gff p_0475 1090691 p_0475 GAGGATAAA 2 - 0.99 intergenic TGCAAAAACTCTTGGAACAAGAGGAAAAGAAAAAAGGGACTACTTTCAAGAAAAAGAGGATAAAGCTGTGA CDS_1175 1090511 1090812 brie28-concat.gff p_0477 1090944 p_0477 AAGAAAATA 3 - 0.91 intergenic TTACAGTTGTAAGATTTTGTTACAAACTAGTAACTTGACAAAAGTCCCAGGCTTTAAGAAAATAGAAGAAA CDS_1176 1090916 1091043 brie28-concat.gff p_0478 1094126 p_0478 TGCTATAAT 5 - 1.0 intergenic CTAAGATAATTGGTTTAGAATCTAGAGGTTAGTATTTTCTAAATCCATGGATTCATGCTATAATAATATGT CDS_1180 1094090 1094205 brie28-concat.gff p_0479 1100051 p_0479 TGGTATAAT 5 - 1.0 intergenic CTTGTTTTTCTTTATAAAAAATTAAGGTCTGTCCCCTTCTCTTTAGATCTCCCTGTGGTATAATAGAAGGC CDS_1185 1100027 1100147 brie28-concat.gff p_0480 1101599 p_0480 TGGTATAAT 5 - 0.94 intergenic TTCGTTAAAATTAACAACTTTTTACACATTCAGGTCATTTGTCTGGCCGAAAAAGTGGTATAATAACTCTT CDS_1186 1101574 1101874 brie28-concat.gff p_0481 1102599 p_0481 AAGATTTTA 3 - 0.97 intergenic GGCTGTCTTTTCTTAAGAGAAACTTAAAGGAAAGACGCTGTTATGGGATTTATAGAAGATTTTAAGATTTG CDS_1188 1102593 1102690 brie28-concat.gff p_0482 1106731 p_0482 TGCTAAAAA 3 - 1.0 intergenic CTGGAGAGATGGCTTCTTTTTTGCGTCAAACTCTTCTTTTTCAAGGTCTCATTTCTGCTAAAAAATGGTAG CDS_1193 1106722 1106990 brie28-concat.gff p_0483 1108058 p_0483 GTTCCAAAA 2 - 1.0 intergenic CTACGGTTCCAACACCAAAAATTTCAAAAAGAAATGTCTTTTTCACAGGGAAGAGGTTCCAAAAGTTTTTG CDS_1196 1108011 1108190 brie28-concat.gff p_0485 1111812 p_0485 TGCTAAAAT 3 - 1.0 intergenic TTTCTTAATGAAAGCTTAAGAGGATAGGATTTATCGTGACAAGGAGCCTAAAAAATGCTAAAATAATAGTA CDS_1201 1111783 1112015 brie28-concat.gff p_0484 1111895 p_0484 TTTGATTAA 2 - 0.9 intergenic CTATTTTCAATAGAAATAGTGCAAAAAAAGGATTTCATTCGAAATTCTTATTCCATTTGATTAAGAAAATG CDS_1201 1111783 1112015 brie28-concat.gff p_0486 1115502 p_0486 TGATATAAT 5 - 1.0 intergenic AAAAAGGAAGTTGTTAGGAAATGTGTTAAAAGCGTTTCTTACCGACCTCCTTTTTTGATATAATTGAAGAG CDS_1206 1115478 1115576 brie28-concat.gff p_0488 1119437 p_0488 TGGTATAAT 5 - 1.0 intergenic GGTTTTATTTTATCATAAAAAGTAGTGATTGTAGCCTCAAAATAGTTTGAATTCATGGTATAATAGAAACT CDS_1210 1119413 1119509 brie28-concat.gff p_0487 1119509 p_0487 TGATAAAAT 4 + 1.0 intergenic GTTTCTATTATACCATGAATTCAAACTATTTTGAGGCTACAATCACTACTTTTTATGATAAAATAAAACCA CDS_1211 1119413 1119509 brie28-concat.gff p_0489 1125099 p_0489 TGCAGAAAA 2 - 1.0 intergenic ATTGCCCCAAAAACTTATTAATAATAGGAAAAGTCTGAAAAGGCTTTTTCTTTTTTGCAGAAAATGTACTA CDS_1214 1124962 1125488 brie28-concat.gff p_0490 1128105 p_0490 TGTAAAATA 4 - 1.0 intergenic AAATATAAAAGTCTCATTTTCTATATGGATTTGCTTTTATTATATCATGATTTAGTGTAAAATAGATACGA CDS_1216 1128079 1128177 brie28-concat.gff p_0491 1131017 p_0491 TGCTAAAAA 3 - 1.0 intergenic TTAGTATTTTTTTGTCAAAATTTTCTGAATACTACTCATTTAAATGTTGGAATATTGCTAAAAAAGTGATA CDS_1219 1130981 1131199 brie28-concat.gff p_0492 1133389 p_0492 TGAAAATAT 4 - 1.0 intergenic TGTTTTTGAACAAAAATGAAAATTAATGATTGAAAACAATATGAAAGAAGTTTTCTGAAAATATTGTGAAT CDS_1221 1133200 1133462 brie28-concat.gff p_0493 1141375 p_0493 TGATAAAAT 4 + 1.0 intergenic TTCGCCGACTTTTTTAATAGATAAACTCAAAAAACTATATCATGATTTTTAATTATGATAAAATAGAAATG CDS_1228 1141242 1141401 brie28-concat.gff p_0494 1142482 p_0494 AACTATAAT 4 + 0.25 intergenic AAAACTACTGTAGAGATTATAGAGCTTTTTGAATGCAGACAAAAAGTCCCATAAAAACTATAATGAGAAGT CDS_1229 1142363 1142509 brie28-concat.gff p_0495 1145197 p_0495 TGGTATAAT 5 - 1.0 intergenic ACGGGCTCCCTTTGGAATTACATGAGTAGTTTTTTTGACCCTATTTTTTAAGTCATGGTATAATGAATTCA CDS_1232 1145127 1145324 brie28-concat.gff p_0497 1148971 p_0497 TGGTATAAT 5 - 1.0 intergenic AATAAGGAATTATTAAGTGAAAGCGTTTTAAACAACTGAAATATAAAGCTTTTTATGGTATAATATTATAG CDS_1236 1148907 1149126 brie28-concat.gff p_0496 1148985 p_0496 TTCTATAAT 4 + 1.0 intergenic ATGCCTCTTTTCTTTCAATCAAATTATTCCAAATTCTCATAAAATAATGGAAAATTTCTATAATATTATAC CDS_1237 1148907 1149126 brie28-concat.gff p_0498 1151611 p_0498 TGGTAAAAT 3 - 1.0 intergenic TTTGTTCAAAAAGTAACAAAGTTTGAGCATAAAACGTGTAATCGTTTTCTAATTGTGGTAAAATTGTATAG CDS_1238 1151578 1151894 brie28-concat.gff p_0500 1156179 p_0500 ATAATAAAA 3 - 0.98 intergenic TATTCTCTGAGAGCAAGATGTCTGGAGACATTTGACAATATTATTAGATTTTGACATAATAAAAAGGTTAT CDS_1244 1156130 1156288 brie28-concat.gff p_0499 1156276 p_0499 AATAAAAAA 3 + 1.0 intergenic AATAATATTGTCAAATGTCTCCAGACATCTTGCTCTCAGAGAATAAATAGGGTAGAATAAAAAAATCTGTA CDS_1245 1156130 1156288 brie28-concat.gff p_0501 1167826 p_0501 TGATATAAT 5 - 1.0 intergenic AATCCGCAGATATAGCTACTAAAAGCAGTTTTCCATCATGAAAATCTGCTTTTTTTGATATAATTATAGTT CDS_1253 1167799 1167954 brie28-concat.gff p_0502 1168916 p_0502 TGGTAAAAT 3 - 0.99 intergenic GTGACATCACGTTTTCAGAAAATTGTCAACTTATCTGTCTGTCTGGTCAAAATTATGGTAAAATGGAAAGG CDS_1254 1168889 1169227 brie28-concat.gff p_0503 1170343 p_0503 TAGTATAAT 4 - 0.93 intergenic AGGGGATTTTTCTGTTATTCTTGCTCTTTTAACCCTTTTCAACTGGGCTTAAACATAGTATAATAGATTCA CDS_1255 1170303 1170593 brie28-concat.gff p_0504 1174537 p_0504 AGCTAAAAT 3 - 0.88 intergenic TTTTGCTATAATAAGATGATTTAAAAAGGGAAAGGAGTCATGCTATCAAAAACGAAGCTAAAATTGAACGT CDS_1258 1174441 1174635 brie28-concat.gff p_0509 1185497 p_0509 AACATAAAA 3 - 1.0 intergenic TTATTTATGATGCGCCATAAAAAAAATAGCTTATGCAAGACAATTGTTTGGTGATAACATAAAAAACATAT CDS_1268 1185475 1185956 brie28-concat.gff p_0505 1185556 p_0505 TATTTTTTT 3 + 0.73 intergenic CCTTTTCTTTTAATATGTTTTTTATGTTATCACCAAACAATTGTCTTGCATAAGCTATTTTTTTTATGGCG CDS_1269 1185475 1185956 brie28-concat.gff p_0508 1185588 p_0508 TGAATAATT 3 - 0.98 intergenic GACTTTTTTTCTAATTATTGAGGTATTTTTGTTTTCAATTGAGAGATATAAATCATGAATAATTTGAAACT CDS_1268 1185475 1185956 brie28-concat.gff p_0507 1185842 p_0507 TATTTTAAT 3 - 1.0 intergenic GAATTAGTGATATTAGCTGCTTAAGCAAAATTGTATTTTAAAATAAAAAACATCCTATTTTAATGTTTCTT CDS_1268 1185475 1185956 brie28-concat.gff p_0506 1185886 p_0506 TTTTAAAAT 3 + 1.0 intergenic GACTACCATTATATCTGTTAAAGCTTAAAGAAACATTAAAATAGGATGTTTTTTATTTTAAAATACAATTT CDS_1269 1185475 1185956 brie28-concat.gff p_0510 1189872 p_0510 TGATTTACA 2 - 0.95 intergenic GCTTTCTTTCCAAAGGTTGTTTCAGCTATTCTGTCACTCTTGCCTTTTTCATCCTTGATTTACACTCCGGT CDS_1272 1189728 1189976 brie28-concat.gff p_0511 1195640 p_0511 AAAGATATA 3 - 0.82 intergenic CATGACAAATGTCATATCATGTCATGACATTTGGTGCTAAAAAGAGAGTGACCAAAAAGATATACTTTAGT CDS_1280 1195602 1195754 brie28-concat.gff p_0512 1196725 p_0512 AAAATGAAA 2 - 1.0 intergenic GGGTTTATTCTTTTTGAAATAAATTTCAGAAAATTCCAAACATATCTTGAAATTCAAAATGAAAGTGCTAT CDS_1281 1196692 1196837 brie28-concat.gff p_0518 1206341 p_0518 ATTCAATAT 3 - 0.89 intergenic TCTAAATTAATTTTTCAAACATTTATATTTTCATTGTACTATAGATATGACTTGGATTCAATATGTTTTAT CDS_1292 1206245 1206425 brie28-concat.gff p_0517 1206393 p_0517 AATGAAAAT 3 + 1.0 intergenic TTAGGTGTTTTATCATGCAATAAAACATATTGAATCCAAGTCATATCTATAGTACAATGAAAATATAAATG CDS_1293 1206245 1206425 brie28-concat.gff p_0519 1209121 p_0519 ACACTTAAA 2 - 1.0 intergenic TCGTTGTTTTTTTCTCTCCAAGTCACCATAAGTGCGAAATATCCCAAAAAGCGTTACACTTAAAGCGTGGA CDS_1294 1209089 1209217 brie28-concat.gff p_0520 1218135 p_0520 AGCTATAAT 4 - 0.89 intergenic TCTATAAGGAAATATAGATAGATTAAAAATTTGCAATAAATATTTTTTTATAGCTAGCTATAATTTATGAC CDS_1305 1218118 1218353 brie28-concat.gff p_0521 1219748 p_0521 TACTAAATA 3 - 1.0 intergenic TAAAAACCTTTCCTAATACGTTTTAATAGCTTGAAGTTCCAAACTAATCATGTCATACTAAATAAGTTGAC CDS_1306 1219681 1219895 brie28-concat.gff p_0522 1223216 p_0522 TGGTATAAT 5 - 1.0 intergenic TTTTATTAATAGAGGTATAAAAACACAGAAATAGCTCTATTTTTGTCTTGCAGTATGGTATAATAGTGCGG CDS_1310 1223190 1223616 brie28-concat.gff p_0523 1224292 p_0523 GGCTATAAT 4 - 1.0 intergenic AATATTAATAATTAGTGATTTTTTGAGTCGTAACTATTGACGTTACATTTTAAACGGCTATAATGTTTATT CDS_1311 1224218 1224670 brie28-concat.gff p_0524 1225266 p_0524 TGTAATAAT 4 - 0.99 intergenic GATCTTAAATGATAAGAAATCGAAAATTATTCGGTTTCTTTTTTTGATTCTAGGTTGTAATAATTGACATT CDS_1312 1225176 1225344 brie28-concat.gff p_0525 1225823 p_0525 TGTTATAAT 5 - 1.0 intergenic AGTGTAAGAGGAACTCTTTCAGTTGTTGTAACTCCTTGTTTTACAACGTTGGTTTTGTTATAATTGATTGA CDS_1313 1225793 1225975 brie28-concat.gff p_0526 1228163 p_0526 TGCTATAAT 5 - 0.98 intergenic TAGTAAGATTGAGAAGTTGGTGTAACCCAGGATTAAGGTGAGGCCTCTTTCTTTGTGCTATAATGTAAGAA CDS_1315 1228117 1228306 brie28-concat.gff p_0527 1230645 p_0527 AAGATAATT 3 - 1.0 intergenic TGGAGTTTTTCCTATAGTACATAGCAAATCTTTGCATTTTTATCTGATATCTTTTAAGATAATTCTATTAC CDS_1319 1230625 1230758 brie28-concat.gff p_0531 1231337 p_0531 ACGTAAAAT 3 - 1.0 intergenic CATAATTGAAATGTTTTAAACAATTAAAGAAAACGCTTGCATAAATTCTAGAAAAACGTAAAATAGAACCA CDS_1320 1231315 1231611 brie28-concat.gff p_0528 1231422 p_0528 TGAAATTAA 3 + 1.0 intergenic GTTTTTCTAGAATTTATGCAAGCGTTTTCTTTAATTGTTTAAAACATTTCAATTATGAAATTAAATATTCT CDS_1321 1231315 1231611 brie28-concat.gff p_0530 1231463 p_0530 TATTATTTA 3 - 0.53 intergenic AAAAAGAGGTGAAAGTCAATCATGAAACGTATTTTTTATGATAGTCCTTTAGAGTTATTATTTAATTTGGG CDS_1320 1231315 1231611 brie28-concat.gff p_0529 1231594 p_0529 TGATATAAT 5 + 0.96 intergenic CACCTCTTTTTCTCCAATAAATCGTCCTTCGCTAATAGCATTTACCTTCGGCATTTGATATAATTTTTTTC CDS_1321 1231315 1231611 brie28-concat.gff p_0535 1233679 p_0535 ATACTATAA 3 - 1.0 intergenic AAAGGAACCTTGATTTAATAGTCGATTATCTTGTGAAAACTTTTCGAAAAAGTGTATACTATAAGTAGAAG CDS_1322 1233659 1233919 brie28-concat.gff p_0532 1233765 p_0532 TACAATTTT 3 + 0.82 intergenic TACACTTTTTCGAAAAGTTTTCACAAGATAATCGACTATTAAATCAAGGTTCCTTTACAATTTTGTGCCTC CDS_1323 1233659 1233919 brie28-concat.gff p_0534 1233784 p_0534 TGATATAGT 2 - 0.87 intergenic CTTATAACGGATTTCCTGTCAAAAATAATTGATTTTTTGAAGGAAAAGTGGATAGTGATATAGTAATCAAG CDS_1322 1233659 1233919 brie28-concat.gff p_0533 1233869 p_0533 AGATATAAT 4 + 1.0 intergenic CACTATCCACTTTTCCTTCAAAAAATCAATTATTTTTGACAGGAAATCCGTTATAAGATATAATGTAACAA CDS_1323 1233659 1233919 brie28-concat.gff p_0536 1237685 p_0536 ATACTTTTT 2 - 1.0 intergenic TTTTTTTACTCTCGAAGACTATTGGTAACACTTGATAACTTTACCAAAATAGTCTATACTTTTTGTTAGTT CDS_1328 1237659 1237832 brie28-concat.gff p_0538 1239030 p_0538 TAGAATTTT 3 - 1.0 intergenic CCTCCTATATGTTATAATTATACACAAAAAATAGTGAATCGCAATCAAAAAAAGATAGAATTTTCGGAAAA CDS_1329 1238869 1239108 brie28-concat.gff p_0537 1239038 p_0537 TTATATAAT 5 + 1.0 intergenic CTTTTCTTTGTATCAATTTTTTTCATAAAAGAAGATTCTTTCATAGTCTATATATTTATATAATTTTCCGA CDS_1330 1238869 1239108 brie28-concat.gff p_0539 1239572 p_0539 TACAATAAA 3 + 0.98 intergenic AGGATAATTTTTTAGATATGGTAAGCCACTACATTCCAAATTTATCCTATCCCCTTACAATAAAATAACCA CDS_1331 1239395 1239644 brie28-concat.gff p_0545 1255658 p_0545 TCATATAAT 4 - 1.0 intergenic TATTAGTAAAATTTTAGTAAAAAACACTGAAATTATTGACTGCATAAACCAATTTTCATATAATGTAAACG CDS_1339 1255632 1255735 brie28-concat.gff p_0547 1260618 p_0547 TAAAAAAAT 3 - 1.0 intergenic TATCCTCCTCATATTTCAGTATAACATAACTTTTATTTTTTTACCTATATTTTACTAAAAAAATAGTAAAA CDS_1343 1260549 1260692 brie28-concat.gff p_0546 1260648 p_0546 TAGTAAAAT 3 + 1.0 intergenic TATACTGAAATCGTAACCCCTTTCACATGGAAAATCAATATTTTTACTATTTTTTTAGTAAAATATAGGTA CDS_1344 1260549 1260692 brie28-concat.gff p_0548 1262725 p_0548 AAGATAAAA 3 - 0.39 intergenic GTTAGACAGAGAAGGTCTAACTTTTGGGGTGCTTTTATTATGAAATTGAGTTATGAAGATAAAATTCAAAT CDS_1346 1262670 1262843 brie28-concat.gff p_0550 1264614 p_0550 TGTTAAAAT 4 - 0.98 intergenic AAACCTTCTATCTCCATAAGTGAAGAAACTTAACTAAAGATAGTATAACAGATATTGTTAAAATTACATCA CDS_1348 1264337 1264812 brie28-concat.gff p_0549 1264651 p_0549 TGTTATACT 2 + 1.0 intergenic ATATTATTTTCCTTAGAGCCAATTTCAATTAATATGATGTAATTTTAACAATATCTGTTATACTATCTTTA CDS_1349 1264337 1264812 brie28-concat.gff p_0551 1272674 p_0551 TGGTATAAT 5 - 0.55 intergenic ACCTTGTCTTCAATCTTAAGAGAGACTCGTCTCTCTTTTTTCGTGTCTAAAAACATGGTATAATATATTT CDS_1355 1272675 1272828 brie28-concat.gff p_0553 1287566 p_0553 TCATAATAA 3 - 0.86 intergenic CTGAACAACCCCTAAACCATAAAAAGAAATGATTTACTTCTCTTTTTATGGTAAGTCATAATAAGAATTTT CDS_1368 1287544 1287777 brie28-concat.gff p_0552 1287676 p_0552 TGATAGAAT 2 - 1.0 intergenic AAAAGGTATTCACTCTTTTTAATAGTGTCCTCACCTTGAAAAAAGTCGCTTTTATTGATAGAATGGTAAGA CDS_1368 1287544 1287777 brie28-concat.gff p_0555 1290812 p_0555 TGGTACAAT 2 - 1.0 intergenic TAATCCATATTTTCTCTAATTTCTTTAGCTTTTCCCTAACTTATATCCTTATTTTTGGTACAATAGGGGCA CDS_1371 1290784 1290967 brie28-concat.gff p_0554 1290913 p_0554 ACCTTTTTA 2 + 1.0 intergenic AGTTAGGGAAAAGCTAAAGAAATTAGAGAAAATATGGATTATTACTTGCAAAATCACCTTTTTAGTTGTAT CDS_1372 1290784 1290967 brie28-concat.gff p_0558 1299404 p_0558 TATTATTTA 3 - 1.0 intergenic TCTGAAAAATTTTTTTAGGTGATAGTTTTTTTTTATCACCTTGATTAAGTTTAAGTATTATTTAAGCTTAG CDS_1379 1299359 1299715 brie28-concat.gff p_0557 1299491 p_0557 TGTGTAAAA 3 - 1.0 intergenic CTTTTTTCTATTTTTTAGAAAATATGTGAAATGCTATTGAAATTATTCCAACAATTGTGTAAAATGGTAAA CDS_1379 1299359 1299715 brie28-concat.gff p_0556 1299528 p_0556 TGGAATAAT 3 + 1.0 intergenic CTAAAAAAATTTTTCAGAATAATCTGAATTGTTGTTTACCATTTTACACAATTGTTGGAATAATTTCAATA CDS_1380 1299359 1299715 brie28-concat.gff p_0560 1303005 p_0560 TGCTATAAT 5 - 1.0 intergenic TGTTATCGAATTTTACAAAATTTTCTGATAAAAAGCTAGACTGCTTGATTATTTATGCTATAATAAAGTTG CDS_1382 1302982 1303367 brie28-concat.gff p_0559 1303222 p_0559 TAAAATTAA 3 - 0.98 intergenic TTGAAACAAGCTATTGTAGACTATATTGATTATTACAACAACAAACGTATTAAGGTAAAATTAAAAGTACT CDS_1382 1302982 1303367 brie28-concat.gff p_0562 1304331 p_0562 TGAATAATA 4 - 1.0 intergenic TTAAATAAGTAAAGTAGTATTTATTTTTAAATAAACACGAACAATATAAAAAGAATGAATAATAACGTTCA CDS_1385 1304126 1304475 brie28-concat.gff p_0561 1304412 p_0561 ATTTAAAAA 3 + 1.0 intergenic TATTCATTCTTTTTATATTGTTCGTGTTTATTTAAAAATAAATACTACTTTACTTATTTAAAAAAATAATA CDS_1386 1304126 1304475 brie28-concat.gff p_0563 1306756 p_0563 TGGGTATAC 2 - 1.0 intergenic ATTGTTTTCCAAGTGGTGGAATGTTGCCTAATTGGATAGCACAATACAAGAAAAATGGGTATACTCTTCTT CDS_1389 1306729 1306830 brie28-concat.gff p_0564 1310605 p_0564 TGTTATATT 3 + 0.99 intergenic AAGATAGGATTCCTCCTTGTCAAAAGCTTTAGTTTTTTATAAAATAAATACAATCTGTTATATTATACCAC CDS_1396 1310530 1310632 brie28-concat.gff p_0565 1311333 p_0565 AGGATCAAT 2 + 0.41 intergenic GCGGACTCTCCACCGTAAAAACGTCTATAAAAACCATTTACTTCATTTTAAGACAAGGATCAATCCTTGTC CDS_1397 1311207 1311570 brie28-concat.gff p_0566 1311500 p_0566 TGTTAAAAT 4 + 1.0 intergenic GTTCGGCAATTTTCATCAATATCGCTTTCTGAAGGCTGAAATTTCTATTTTTTTTTGTTAAAATAGAAGCA CDS_1397 1311207 1311570 brie28-concat.gff p_0567 1314116 p_0567 TAAAATAAT 3 + 0.99 intergenic GTTATTTATATCGCATCATTTATACTATTTTGTTGCAATCTTCACAAACCTTTCCTAAAATAATATAAGTG CDS_1400 1314006 1314150 brie28-concat.gff p_0568 1316288 p_0568 AAGAAAAAA 3 - 0.98 intergenic GAAGTCAATAAATCAGAAAATGTTTTTCTTCTTTTGTTGTTTCAGAGTTTGGTCAAAGAAAAAATCCTCAG CDS_1402 1316236 1316415 brie28-concat.gff p_0569 1325490 p_0569 TGGTATAAT 5 - 1.0 intergenic AATGGCGACTTGAACAGTCGCTTTTCTTTTTGTATTAGGCAAAAAGCCCAGAAAATGGTATAATTGAGTGG CDS_1409 1325463 1325582 brie28-concat.gff p_0570 1330289 p_0570 TGATATAAT 5 - 1.0 intergenic AGTTAAAAGAGAGAATGTGTGTAATGCTGTTCTCTCTTTTTTTTTATTGAGAATATGATATAATTAATAGA CDS_1415 1330261 1330382 brie28-concat.gff p_0571 1331261 p_0571 TTGTTAAAA 3 - 1.0 intergenic ACAAATGAATTAGTTGAATAGAATTATAAATGAAAGCAGATTTTTTCTGCTTTTTTTGTTAAAATAAAACT CDS_1416 1331233 1331351 brie28-concat.gff p_0572 1335632 p_0572 TGTTATAAT 5 - 1.0 intergenic TAAAAAGGGTTTTGCTCATGAAAAATCAATTTTATTTTACTTTCATTTTTCGTCATGTTATAATTAGGGGT CDS_1420 1335600 1335708 brie28-concat.gff p_0573 1335895 p_0573 AATAAATAA 3 - 0.98 intergenic AATGAAATTAACAGAAAAAAAGCTTGAGTATTTTCAAGCTTTTTTCTTTTTATCGAATAAATAAGTCAGTT CDS_1421 1335839 1335972 brie28-concat.gff p_0577 1336187 p_0577 TGTATACTT 2 - 1.0 intergenic AATAGCAAAAAGTTCCTAAACTTAAATATATTTCTTGACAGAAAAAGGCGAGTCTTGTATACTTGGATAGA CDS_1422 1336148 1336529 brie28-concat.gff p_0574 1336292 p_0574 TTCTATAAT 4 + 0.98 intergenic CAAGAAATATATTTAAGTTTAGGAACTTTTTGCTATTACAGTTGACTTCTGAAAGTTCTATAATGAAGTTA CDS_1423 1336148 1336529 brie28-concat.gff p_0576 1336387 p_0576 CTATTATTA 3 - 0.65 intergenic TGGATTTCATTTGACAACAGGAACCCTTGAAACTGTTTTGTCAGCTAAACCAAGGCTATTATTAGCCTTGG CDS_1422 1336148 1336529 brie28-concat.gff p_0575 1336498 p_0575 TGTGCTATA 2 + 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_1423 1336148 1336529 brie28-concat.gff p_0578 1338394 p_0578 AAAAAATAT 3 - 0.97 intergenic TAATTTTATTAATAAATGTTGACAATGCTACTAATTTTAAATAAAATAAACAAGCAAAAAATATATTTATA CDS_1424 1338382 1338475 brie28-concat.gff p_0579 1339648 p_0579 AGTTATTAT 3 - 1.0 intergenic TCTTAAATCTAAAATGAGGAATACCCCATTTTTTATTGAATTCTCTGCTAAAAACAGTTATTATCAAAGTA CDS_1425 1339584 1339931 brie28-concat.gff p_0580 1341652 p_0580 TGAAATTAA 3 - 1.0 intergenic TTGAAATGAGATAGAAAACTTTAAAACAAGCGATTTTCGGTATTTATAACGATTCTGAAATTAATAAAAAT CDS_1427 1341555 1341769 brie28-concat.gff p_0582 1345928 p_0582 AATTCGTTA 1 - 0.63 intergenic AACAATAATTGTTAATTGTGAGAGTTGTTTTAGAAGAAGTTGACAAGTTTGTGTCAATTCGTTACACTGTA CDS_1431 1345892 1346091 brie28-concat.gff p_0581 1346064 p_0581 TGATAGAAT 2 + 1.0 intergenic ATTGTTATATTTTATAACATGACGCTTCTCAGAGTTTGATAACAAGGGCTTTTTTTGATAGAATAGAAAGG CDS_1432 1345892 1346091 brie28-concat.gff p_0583 1352736 p_0583 CATTTAATA 3 + 1.0 intergenic AAACACAAAACGGAATAAATCCGTTATAGTTGATAAAAAATAAATAAAATGCTAACATTTAATAAAAGTGT CDS_1441 1352611 1352772 brie28-concat.gff p_0585 1354806 p_0585 TTATATAAT 5 - 1.0 intergenic TTCGACAATTTCTTGGATAACCATAATAAAACTCCTTTCAATTTTGATGCTCTTATTATATAATTTTAAAA CDS_1443 1354774 1355123 brie28-concat.gff p_0584 1354862 p_0584 TTTTATTAT 3 + 0.95 intergenic TCTTCTTTACACTTTTTTTAAAATTATATAATAAGAGCATCAAAATTGAAAGGAGTTTTATTATGGTTATC CDS_1444 1354774 1355123 brie28-concat.gff p_0586 1358143 p_0586 AGCTAAATT 3 + 0.92 intergenic GAATCTAAATTCGGATAAGGTTTTTTATTTGCCTTGATTCTTTCATATACTTCATAGCTAAATTGGAGTAA CDS_1446 1357991 1358276 brie28-concat.gff p_0587 1358264 p_0587 TGGTATAAT 5 + 0.97 intergenic GTTTACCTCTATATAAACAAGTTTTGGAAGACTTTGGTGGTAGGGTCAATAAAGATGGTATAATGGAATAC CDS_1446 1357991 1358276 brie28-concat.gff p_0588 1361794 p_0588 TATCATAAA 3 - 0.95 intergenic GGTTTCAAAACTTTTGTTATCACAATTTTCGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCT CDS_1450 1361771 1361995 brie28-concat.gff p_0590 1368257 p_0590 ATTGCTGAT 1 - 1.0 intergenic ATTGCTGATTTTTCAAAAAAATCTACTGAAAACTCTTGAAATTCAAAATAAAAGGAGTAGACTAGTAGGTG CDS_1456 1368236 1368516 brie28-concat.gff p_0589 1368427 p_0589 TGGTATAAT 5 - 0.94 intergenic TTGCCACAGTAAGTGGAAATATGATAAGATAGAAACAGTTGCCGCTATAGTTAAATGGTATAATAGAGCAA CDS_1456 1368236 1368516 brie28-concat.gff p_0591 1372337 p_0591 CGCTATAAT 4 - 1.0 intergenic AACGGGCAATTCCGTTCGTTTTTTACTATTAACACTTTACAATATTCAGAAAATTCGCTATAATAGGCCCA CDS_1461 1372315 1372469 brie28-concat.gff p_0592 1374812 p_0592 TGCTATAAT 5 - 1.0 intergenic ATTGTCAAAGCTCTTGAAAAAGATATACTATTTTTCTTGAATAGTTGTATTACTGTGCTATAATAAAGCAA CDS_1466 1374778 1374968 brie28-concat.gff p_0593 1379792 p_0593 TGGTATTTT 3 - 1.0 intergenic AAATTCCTTGTCGTCAAGATAGGGATTTTTTGCTATAATTAATTTTGGCTTTTTGTGGTATTTTTCTTTTA CDS_1471 1379683 1379873 brie28-concat.gff p_0595 1380742 p_0595 TAGAATAAA 3 - 1.0 intergenic AGATTTGTCTAAAATATCATACTAATTAGAGCCCAACTTTTCAACTTTTTTGTGTTAGAATAAAGATGAGT CDS_1473 1380720 1380941 brie28-concat.gff p_0594 1380878 p_0594 TGGTAAAAT 3 + 1.0 intergenic AAATCTGAAGTTATTGTTTTTCGGCCATACAATCGATTGCGTAATTCTTCTGATTTGGTAAAATAAAGGCA CDS_1474 1380720 1380941 brie28-concat.gff p_0596 1383840 p_0596 AGTTATAAT 4 - 1.0 intergenic TGGTTAGAATTCAGCTAGACAATTTTATTTTTTGCAAGAAAAATCAAGCAAAATGAGTTATAATAGATAGT CDS_1476 1383816 1383962 brie28-concat.gff p_0597 1387194 p_0597 AGGGTTAAA 2 - 0.99 intergenic CTAGGGTTGCCTTTTTTATATTTTGGTTGTAGCTAGCAATCTTTGGTATAATAAGAGGGTTAAAGTGGTAT CDS_1478 1387132 1387275 brie28-concat.gff p_0601 1387880 p_0601 ACATAAAAA 3 - 1.0 intergenic AGTTTGTCTCTAGTTTTTTGTAGAAAATTTAAATCTGTCAAGTTTTTTTCTTGACACATAAAAATGATATG CDS_1480 1387807 1388240 brie28-concat.gff p_0598 1387945 p_0598 TACAAAAAA 3 + 1.0 intergenic GTATACCATATCATTTTTATGTGTCAAGAAAAAAACTTGACAGATTTAAATTTTCTACAAAAAACTAGAGA CDS_1481 1387807 1388240 brie28-concat.gff p_0600 1388086 p_0600 TTGATTTAT 3 - 0.66 intergenic CACCCCAAAAGTTAGATAGAGAAAGTCTAACTTTTGGGGTGTTTTTATTATGAAATTGATTTATGAAGATA CDS_1480 1387807 1388240 brie28-concat.gff p_0599 1388215 p_0599 TGCTATAAT 5 + 1.0 intergenic AACTTTTGGGGTGCAGTTCAAGTTTGACTAGGCCTTTTTTCTTTTTCCATACTTTTGCTATAATAGAGCCA CDS_1481 1387807 1388240 brie28-concat.gff p_0602 1392493 p_0602 GAGTATAAT 4 - 0.59 intergenic ATTGAAGACAAAGTCCTTAGAAGTTATACTTCTGGGGACTTTTATTGATTTGAAGGAGTATAATAAAATAA CDS_1484 1392412 1392603 brie28-concat.gff p_0603 1404267 p_0603 AAAATATAT 3 - 1.0 intergenic TGATGGAGTTTTTTTCTTTTTGATATATTTTTCAAGTTTTTTACGAATAAGAAAGAAAATATATCAATTAA CDS_1494 1404257 1404365 brie28-concat.gff p_0605 1405145 p_0605 TGGTATAAT 5 - 1.0 intergenic CACACCATTTTCAATAGTTTACAAAGAAATTCGATGAAACTAGCGCCCCTTTTTTTGGTATAATAAGAAAA CDS_1495 1405120 1405320 brie28-concat.gff p_0604 1405250 p_0604 AGCTATAAT 4 + 1.0 intergenic TCATCGAATTTCTTTGTAAACTATTGAAAATGGTGTGGCACTTTCTAATGGTTTGAGCTATAATGTAACTA CDS_1496 1405120 1405320 brie28-concat.gff p_0606 1409523 p_0606 CTTAAATAT 3 - 1.0 intergenic AACCGTCTTCTCAAATTGGAGGCGGTTTTAAAACATTATTTTCTGTCTTTTTATCCTTAAATATGATAGAA CDS_1500 1409415 1409606 brie28-concat.gff p_0608 1410945 p_0608 TGTGGTATA 2 - 1.0 intergenic ACTCTTTTATTGTACTACCAGAAACCAATTTCTGCAAGTGTATTAAATCTTAAAATGTGGTATAGTTAGAG CDS_1502 1410908 1411209 brie28-concat.gff p_0607 1411018 p_0607 TACAATAAA 3 + 1.0 intergenic CTAACTATACCACATTTTAAGATTTAATACACTTGCAGAAATTGGTTTCTGGTAGTACAATAAAAGAGTCA CDS_1503 1410908 1411209 brie28-concat.gff p_0609 1412189 p_0609 TGTATTTTA 3 + 1.0 intergenic AACCAATAACAACAATTTTTGTTTCTTCATATGAATTACCTCACTTTTGTTTTACTGTATTTTATGTTAAG CDS_1504 1411784 1412235 brie28-concat.gff p_0612 1416318 p_0612 TACAACTAT 2 - 0.27 intergenic AAGCCTCGACAACAAATATAGCTTTTAAAAGACAGAAATTTTCTGAAAGAAGTGCTACAACTATCTTACTT CDS_1506 1416183 1416533 brie28-concat.gff p_0611 1416411 p_0611 GGATATAAT 4 - 1.0 intergenic TATTTGTTTTATTCTAACACAAAACGCTTTCAAAATTGCTTTCACACTGTAATTTGGATATAATAAAAGAG CDS_1506 1416183 1416533 brie28-concat.gff p_0615 1418725 p_0615 TGATATAAT 5 - 0.98 intergenic CTTTCATCAACCATTGTAACAAATTCATCTCCCAAGCAAAAGCTAGCCCGATTTGTGATATAATTGGGAGT CDS_1508 1418660 1418907 brie28-concat.gff p_0613 1418791 p_0613 TGTTACAAT 2 + 0.75 intergenic CAATCACTCCCAATTATATCACAAATCGGGCTAGCTTTTGCTTGGGAGATGAATTTGTTACAATGGTTGAT CDS_1509 1418660 1418907 brie28-concat.gff p_0614 1418908 p_0614 GCTTTAATT 2 + 0.97 intergenic CAAAGAGAAAGACAGAAGAAGTGACTGCCAAAGTATTGAAGAACCTAAAGCTAGCGCTTTAATTGGAGAA CDS_1509 1418660 1418907 brie28-concat.gff p_0616 1423382 p_0616 TAGAATAAA 3 - 1.0 intergenic TTTTCTTTATCACCTTGATAAAAAATACATATTATCCAAAAAAACTCAGCGGTGGTAGAATAAAGCTAACG CDS_1514 1423224 1423549 brie28-concat.gff p_0617 1424671 p_0617 TGATATGAT 2 - 1.0 intergenic AGCTCTTGGGCTGTTTTTTTCTGTCCATAATCTTTTTGAAAAACTCTTCCTTTTGTGATATGATTAGGGTA CDS_1515 1424595 1424757 brie28-concat.gff p_0618 1427748 p_0618 TTCTATAAT 4 - 1.0 intergenic GGAGTATTTTTCATCAAAAATAAATCTATAAATGTAGATAAAATTCTTGACACCTTTCTATAATAGTGTTA CDS_1518 1427698 1427842 brie28-concat.gff p_0624 1438513 p_0624 AAGAAATAT 3 - 0.92 intergenic CAACATGTAATTGGAGATAGAAAAGGAGAGAGAAGATGACAATGCAAAAAAGAAATATTTTAGGGATGTCG CDS_1529 1438493 1438883 brie28-concat.gff p_0623 1438596 p_0623 TGAATAGTG 2 - 0.63 intergenic GTAGAAGCAATTACAGAAGCCACAAATCCTTGAGTTTTAAGACTTGTTATGAATAGTGTACAATGCTTAAT CDS_1529 1438493 1438883 brie28-concat.gff p_0622 1438789 p_0622 TGGTATAAT 5 + 1.0 intergenic CTTATAATTACGGATTCTCTTTGACCCTCTCTCACTTTGTCATTCAAACTAAACATGGTATAATAGTTGAG CDS_1530 1438493 1438883 brie28-concat.gff p_0625 1439643 p_0625 TGGTAAACT 2 - 0.91 intergenic TGGACTGGCACTGCACCCATAAAATGAGACACAAGAAAACACTCTTGTTGAATTCTGGTAAACTAGAAACA CDS_1531 1439630 1439803 brie28-concat.gff p_0626 1440517 p_0626 TAGAATCTA 2 - 0.99 intergenic AAGAAAAGAAAATCCCTCTAGGGTTATGTCTTGCATATTCCCTCACGTTATAAGGTAGAATCTAGGTATCA CDS_1532 1440465 1440641 brie28-concat.gff p_0630 1441847 p_0630 TATGATATT 2 - 0.51 intergenic TAAGTAATTCTTCAAATGTCCTGAATGACTTGTCAAATTGACAGACAGGTGTGATTATGATATTCTCATAG CDS_1534 1441817 1442328 brie28-concat.gff p_0627 1441986 p_0627 TTTGATAAA 3 + 0.99 intergenic TTACGAATCTATTTTTCCTTTCATTTTTCAAACAGTTTAGATAGGAAGGCAGGCTTTTGATAAACTATTTT CDS_1535 1441817 1442328 brie28-concat.gff p_0629 1442237 p_0629 TGGTAATAT 3 - 1.0 intergenic TTGCTTTTGTTTATTGTTTATTATGGCATAATTTAGGGCTTTTTTCAATCCGGTTTGGTAATATGAGGCTA CDS_1534 1441817 1442328 brie28-concat.gff p_0628 1442299 p_0628 CATAATAAA 3 + 1.0 intergenic AGCCCACTATAGCCTCATATTACCAAACCGGATTGAAAAAAGCCCTAAATTATGCCATAATAAACAATAAA CDS_1535 1441817 1442328 brie28-concat.gff p_0632 1444589 p_0632 ACAATTTAT 3 - 1.0 intergenic TATTTTAGCATAATTTAAAAAGAGAAAATAGTTGGTAAATGGTCAGATTTTTTAGACAATTTATGTTAAAA CDS_1536 1444538 1444666 brie28-concat.gff p_0631 1444666 p_0631 TGCTAAAAT 3 + 1.0 intergenic CATAAATTGTCTAAAAAATCTGACCATTTACCAACTATTTTCTCTTTTTAAATTATGCTAAAATAAAACTA CDS_1537 1444538 1444666 brie28-concat.gff p_0633 1451832 p_0633 AATTATAAT 5 - 1.0 intergenic TGTTTTGGGTATTGCTATGACTTCCATGTTTATTCTTAATTTTAAAATGATATGAAATTATAATAATCTTA CDS_1546 1451708 1452114 brie28-concat.gff p_0634 1458702 p_0634 TCATATAAT 4 - 1.0 intergenic TGAAGGACAAATTAAGGTATAGAGACACTTTTAAAGCATTGAAGATGTTAAAAAATCATATAATGCTTGAA CDS_1552 1458687 1458791 brie28-concat.gff p_0635 1461023 p_0635 TTAAAAATA 3 - 1.0 intergenic ATTGTTCTGTAAAGGTTGTTCTTAAAAAATAGGACTTAAGTTCCACACATAAACCTTAAAAATATGGTAAA CDS_1555 1460992 1461129 brie28-concat.gff p_0636 1465845 p_0636 TGGTAAAAT 3 - 1.0 intergenic GTGACAAAAAAGTTGCTACAGTTTTTTTATTCTCCCAGTAAATTAGGCTAAATTATGGTAAAATAGAGGGT CDS_1560 1465811 1465951 brie28-concat.gff p_0637 1466585 p_0637 TTCTTATTA 3 - 1.0 intergenic TTTGGACTGGCTTTTTTGTAAGGGGTAGAAATTGTAATGTTTTCTAAAAATGATATTCTTATTAAAGTTTG CDS_1562 1466427 1466743 brie28-concat.gff p_0638 1469729 p_0638 TAGACTAAA 2 - 0.75 intergenic TTCCTCTCTATCAACTGATTAAGAATATGAATTAGTCAAGCGGATATATTCGTGTTAGACTAAAGGCATTG CDS_1566 1469706 1469829 brie28-concat.gff p_0639 1471408 p_0639 TAGATAAAA 3 - 1.0 intergenic AAACTGGACAAAAAGACTTGTTCGGTTTTTATCTTGCTTAAAAAGGAGTCGTTTTTAGATAAAATCCGAAC CDS_1568 1471228 1471488 brie28-concat.gff p_0641 1472878 p_0641 AGGTATAAT 4 - 1.0 intergenic ATCAGTAATGGGAAGAGTTTGACCTTATCTAAAAATTGAATATTGTCTGAAAAAGAGGTATAATACAATCT CDS_1569 1472702 1473057 brie28-concat.gff p_0640 1473037 p_0640 GAGTATAAT 4 + 1.0 intergenic AGTCAAAAAAGATTTCAGAAAACCCATAACAATGTTTTCATTTTTAAGATTAAAGGAGTATAATAAAACTA CDS_1570 1472702 1473057 brie28-concat.gff p_0644 1475980 p_0644 AGGTATAAT 4 - 1.0 intergenic ATAGTATAACTTTTATCTTAAATTAGATAGACATGGAGCATGTTTCTGATAAAAGAGGTATAATAAAAAGT CDS_1572 1475952 1476497 brie28-concat.gff p_0642 1476061 p_0642 TACTATAAT 4 + 1.0 intergenic ATACCTCTTTTATCAGAAACATGCTCCATGTCTATCTAATTTAAGATAAAAGTTATACTATAATACATCTA CDS_1573 1475952 1476497 brie28-concat.gff p_0643 1476388 p_0643 TGTTACAAT 2 + 1.0 intergenic TATTTTGTTTAGAAGGGATTGTTTGACCAGGTGCCGTTATAGCTGGTGCTGCTGGTGTTACAATAGCAACA CDS_1573 1475952 1476497 brie28-concat.gff p_0646 1478308 p_0646 TGATATAAT 5 - 1.0 intergenic CGATGATAAATTACTCTAAGTATAGCATAAAATAGGAACCTATATTGGAAAATTGTGATATAATGAAAGTC CDS_1574 1478279 1478392 brie28-concat.gff p_0645 1478360 p_0645 CTATTTTAT 3 + 1.0 intergenic CCTCTAAAAAAAAAATTCTGACTTTCATTATATCACAATTTTCCAATATAGGTTCCTATTTTATGCTATAC CDS_1575 1478279 1478392 brie28-concat.gff p_0647 1489181 p_0647 TGATATGAT 2 - 0.31 intergenic TAAAAGTTGAGACTGCTGTCTCTGCTTTTTGACGTTAATAAAGCAGAATTATCAGTGATATGATTTACTTA CDS_1586 1489098 1489259 brie28-concat.gff p_0652 1492394 p_0652 TATTATAAT 5 - 1.0 intergenic AACTCCGTTTTTAAAGACATTCTTTTATAATACAGTTTTGAAAACTGGAAATCTGTATTATAATTTTCTGT CDS_1589 1492289 1492567 brie28-concat.gff p_0651 1492447 p_0651 TGTATTATA 3 + 1.0 intergenic ACCAAAATCTATCAAAAAACAGAAAATTATAATACAGATTTCCAGTTTTCAAAACTGTATTATAAAAGAAT CDS_1590 1492289 1492567 brie28-concat.gff p_0653 1494968 p_0653 AACTATAAT 4 + 1.0 intergenic AGCGAGTTCTTTTCTTTTTGTAAAACACTTGCTTTTCATTATAGTTTTCTAAATAAACTATAATTTATATT CDS_1591 1494876 1495143 brie28-concat.gff p_0654 1495889 p_0654 TGAAAATAA 4 + 0.68 intergenic GCCAAGAAACTGTCAGTAAGGAACAGGTGGAAAAATTCTCCCAAACTCTTGGATTTGAAAATAACCGTCCT CDS_1592 1495805 1495943 brie28-concat.gff p_0655 1496668 p_0655 TGATATAAT 5 - 0.94 intergenic AACAGCCCCCATTATCTAATAATAGTTAGATAACGGGGGTTGTTTTTTTATAAAATGATATAATACTCCCT CDS_1594 1496652 1496763 brie28-concat.gff p_0656 1497691 p_0656 TGGTATAGC 2 + 0.3 intergenic AAAAATGCCTCCTCAAAAAAGGTTTTCCAAGACCAGTATAACACCGTTAAAAATCTGGTATAGCCTGTTAT CDS_1598 1497619 1498017 brie28-concat.gff p_0660 1502900 p_0660 AGGAAACTT 1 - 1.0 intergenic CTTCATTATAGAACTTTCAGAAAGAATGTAAAAAATTACAATCCTGTATTTTCTTAGGAAACTTCTTGTCA CDS_1605 1502858 1503211 brie28-concat.gff p_0657 1502974 p_0657 TTCTATAAT 4 + 1.0 intergenic CAAGAAGTTTCCTAAGAAAATACAGGATTGTAATTTTTTACATTCTTTCTGAAAGTTCTATAATGAAGTTA CDS_1606 1502858 1503211 brie28-concat.gff p_0659 1503069 p_0659 CTATTATTA 3 - 0.65 intergenic TGGATTTCATTTGACAACAGGAACCCTTGAAACTGTTTTGTCAGCTAAACCAAGGCTATTATTAGCCTTGG CDS_1605 1502858 1503211 brie28-concat.gff p_0658 1503180 p_0658 TGTGCTATA 2 + 0.85 intergenic TTCAAGGGTTCCTGTTGTCAAATGAAATCCAATTTAAGGCAAAAGAAAACACCTCTGTGCTATACTTGTTG CDS_1606 1502858 1503211 brie28-concat.gff p_0661 1504273 p_0661 GAATATAAT 4 + 1.0 intergenic ATTAGGAAAATCATTATATTATCTTTACCTTAGGACTCGCTATTTCTTCATTTTAGAATATAATAAAGACT CDS_1607 1504164 1504385 brie28-concat.gff p_0663 1505737 p_0663 TGATAAAAT 4 - 0.99 intergenic CCTCAAAAATAATACGTAAATATTCCAGAAATATCTTTACATCAGACATTATACCTGATAAAATGATAAAT CDS_1608 1505697 1505818 brie28-concat.gff p_0662 1505768 p_0662 AGGTATAAT 4 + 0.78 intergenic TTGTCTCTTTATTTCCTTTCGATTTTACAATAATTTAGACATTTATCATTTTATCAGGTATAATGTCTGAT CDS_1609 1505697 1505818 brie28-concat.gff p_0664 1508203 p_0664 TGTTATTTA 3 + 0.06 intergenic TTTATTGTGTGAAAATAAACAAGATTTGATCTTCAATTTTTACGATTCATTTTGATGTTATTTAAACAAAT CDS_1610 1508085 1508501 brie28-concat.gff p_0665 1508351 p_0665 GAATAAAAA 3 + 0.18 intergenic TATAAAAAAGAAAAATTCCAACAAACAAAATGGAAAGCCAGAGTGTCTTCTTAACGAATAAAAAGTATTGA CDS_1610 1508085 1508501 brie28-concat.gff p_0667 1510450 p_0667 TGAGATTTT 2 - 1.0 intergenic ATTGAAAAATTGTAACATAAAGAAAACGGTTTTTCATTTTTTTATGAGTATAAAATGAGATTTTTTTCTGA CDS_1612 1510306 1510556 brie28-concat.gff p_0666 1510498 p_0666 ATAAAAAAA 3 + 1.0 intergenic CTAATGTATATTATTTCTAAAATTCAGAAAAAAATCTCATTTTATACTCATAAAAAAATGAAAAACCGTTT CDS_1613 1510306 1510556 brie28-concat.gff p_0670 1517097 p_0670 TCCGTTATA 2 - 0.0 intergenic CTTGCAAACGTTGAGGTAGTGTAAAATAAGTTGTGTAAACACAAAAAGGAATAAATCCGTTATAGTAGAGT CDS_1619 1517065 1517372 brie28-concat.gff p_0669 1517207 p_0669 TGTTAGAAT 2 - 0.77 intergenic CACCCTATAATAAAATCATAGCTTGAGAGAAAAAGCTAAAAATAATTTAGGAGGTTGTTAGAATGACAAGG CDS_1619 1517065 1517372 brie28-concat.gff p_0671 1520966 p_0671 TGGAAAATT 3 - 0.32 intergenic ACAAGGTCTATAATTTTGACTCCTTTGCTTATCAATTGCCAGAGTCTACTGATTTTGGAAAATTGACTTAT CDS_1621 1520867 1521055 brie28-concat.gff p_0673 1525916 p_0673 TGAATCAAC 2 - 1.0 intergenic GCCTTAGTTTTTAGAAGATTTTCTTTAAAAGTAAAAGAACTTGTAAGTTCTAAGCTGAATCAACTCTCAAA CDS_1627 1525819 1526148 brie28-concat.gff p_0672 1526056 p_0672 ACTTATTAT 3 - 0.88 intergenic TAAATTTAGATTAAAAAAATTTAAGAGGTTGAAACTATAAAGTTTCGGCCTCTTTACTTATTATTCATCTT CDS_1627 1525819 1526148 brie28-concat.gff p_0674 1532134 p_0674 TGCTATAAT 5 - 0.95 intergenic GCTTTTTTTTTGACTTCCTAACAACTTTCAAGTCGAGACAATTTCTCTGTTCTTATGCTATAATAAAAATC CDS_1632 1532134 1532302 brie28-concat.gff p_0675 1533695 p_0675 AAATATAAT 5 + 0.98 intergenic GGTAATGTTTTACTTTTAAATGACGAAGTAGTTTCATAGAGTATTCACATTTCTTAAATATAATTTTAGTA CDS_1636 1533410 1533735 brie28-concat.gff p_0676 1534439 p_0676 TTATAATTG 2 - 0.94 intergenic ATTTTATCGAAAATAGTAATATTATTTTGATAATAATTTTTGTATTCAATTATAATTGCTAGTCTATTTTA CDS_1637 1534291 1534511 brie28-concat.gff p_0677 1534862 p_0677 TATTAAATT 3 - 1.0 intergenic CTAGATTAGAAGAGTATTGTTTTCCTGAAAAAATGAAAATATATTAAAAATAATCTATTAAATTTTTCAAA CDS_1638 1534780 1535161 brie28-concat.gff p_0678 1537236 p_0678 TGTTAAAAT 4 - 1.0 intergenic GGAGGGATTCTTTTTTGATGGATAATACTGGATGTGTAAACCTATGCATTATATATGTTAAAATACAAGAA CDS_1640 1537216 1537337 brie28-concat.gff p_0680 1539805 p_0680 TACAATAAA 3 - 1.0 intergenic AAGCAAAATCACCCCATATTTGTAAACGTTTTCTTTAAATTGTACCTTAAAAGGATACAATAAATGAGAAA CDS_1643 1539661 1539935 brie28-concat.gff p_0679 1539910 p_0679 AAACTTATA 2 + 1.0 intergenic TAAAGAAAACGTTTACAAATATGGGGTGATTTTGCTTTCAGCCTTTGATAAGGCTAAACTTATAGTATTTA CDS_1644 1539661 1539935 brie28-concat.gff p_0681 1549432 p_0681 AGGATTTAT 2 - 0.96 intergenic GTAGCGAATATTTTCTGGATTTGGAAACGCTTCTTTTTTTGAAACAGATGGAGAGAGGATTTATGGGCATA CDS_1647 1549166 1549509 brie28-concat.gff p_0682 1549676 p_0682 TGTTATAAT 5 - 1.0 intergenic CTTAGGGTCTAAACTTTACCACTTACCTAAAAGGCCTTGTTTAGTTTAAAGCAGCTGTTATAATAGAAGAA CDS_1648 1549649 1549867 brie28-concat.gff p_0684 1553505 p_0684 TGTTATAAT 5 - 1.0 intergenic CAGTATGAAGGACTAGGATTTTTTTAATCATTTATACTACTCACTATCTTATTTATGTTATAATTTATTTT CDS_1653 1553475 1553591 brie28-concat.gff p_0683 1553553 p_0683 TAGTATAAA 3 + 0.96 intergenic CCCTCCTTCTAACATTTTATGCTAAAATAAATTATAACATAAATAAGATAGTGAGTAGTATAAATGATTAA CDS_1654 1553475 1553591 brie28-concat.gff p_0685 1557351 p_0685 TGTTATAAT 5 - 0.98 intergenic AAGGAAATCCAGTTTGATACTGGATTTTTTGATTTTAGGGAAGATCATTTCCATGTGTTATAATAGCTGAT CDS_1655 1557301 1557430 brie28-concat.gff p_0686 1563674 p_0686 TGGTAAAAT 3 - 1.0 intergenic AGGGTTTTTTTCTTTGTCAATACTTGAGTGATTTCTTGTTTAAAAGGGGCATTTGTGGTAAAATACGGAGA CDS_1660 1563650 1563833 brie28-concat.gff p_0687 1566127 p_0687 CTTTATAAT 4 - 1.0 intergenic AGTTGGTAGCAGCTTAAATATGCTTTTATTTAGATTGTCTTTTATCTTACTTTTTCTTTATAATAGTGACA CDS_1663 1566086 1566271 brie28-concat.gff p_0690 1568287 p_0690 TGTTAAAAT 4 - 1.0 intergenic CGATTTATAATAAGAAAACAAAAAAATGCTAAACGTTTGACATATGACAGAAAGATGTTAAAATTAATATC CDS_1664 1568172 1568421 brie28-concat.gff p_0688 1568300 p_0688 TACGATATT 2 + 1.0 intergenic TATCAATTTTAACATCTTTAACAAAATTTGTTTTTGAAAACGTTTCACTTTTCTTTACGATATTAATTTTA CDS_1665 1568172 1568421 brie28-concat.gff p_0689 1568384 p_0689 TAGGTAAAA 2 + 1.0 intergenic ATATGTCAAACGTTTAGCATTTTTTTGTTTTCTTATTATAAATCGTTGATTTTTCTAGGTAAAACGTTTAC CDS_1665 1568172 1568421 brie28-concat.gff p_0691 1572403 p_0691 TGGTAAAAT 3 - 1.0 intergenic AAATCCTAGGGTTTAGGTTTGATTCTATAAAATATTTGAGCCATGCTGTCATTTATGGTAAAATAAACTGA CDS_1669 1572374 1572487 brie28-concat.gff p_0692 1574043 p_0692 TGATATAAT 5 - 1.0 intergenic GCCATCAAAAAAAACACGCCAAAGCATCAACTTCGTTCTTTAAAATCTGAAAATTTGATATAATTAACCTA CDS_1671 1574022 1574211 brie28-concat.gff p_0693 1575699 p_0693 AAATATAAT 5 - 0.81 intergenic TAAGTTTTCATCGTCCAAGTGAATAGTTCACTTGGATGTTAAAGATTTATATTTAAAATATAATTAAGCAA CDS_1675 1575481 1575821 brie28-concat.gff p_0695 1579439 p_0695 TGTTATAAT 5 - 1.0 intergenic CACTCAACCATTATACTATATTTGAAACATTTTTGGGTTGGATAAATTGAAATTTTGTTATAATTATGAGA CDS_1678 1579365 1579683 brie28-concat.gff p_0694 1579508 p_0694 TAGTATAAT 4 + 1.0 intergenic TCTCTCATAATTATAACAAAATTTCAATTTATCCAACCCAAAAATGTTTCAAATATAGTATAATGGTTGAG CDS_1679 1579365 1579683 brie28-concat.gff p_0696 1581450 p_0696 TAAAATATT 3 + 0.86 intergenic CCCATAAGGGTGCTTTTTTGCGTCAGAAATCTTGACACAGCTGGCTGTTCTATACTAAAATATTAAAGCTA CDS_1681 1581360 1581477 brie28-concat.gff p_0698 1583656 p_0698 TGGTAAAAT 3 - 1.0 intergenic CTCACAAAAATAGAGCAGACACATTGACTTTTTCCTTGCATTATCACCTATTATTTGGTAAAATTATCTAT CDS_1684 1583586 1583805 brie28-concat.gff p_0697 1583805 p_0697 TGCTAAAAT 3 + 0.66 intergenic AATCACTCAGAAAATACTAAGCCCTATCTGTTATCTTTTCTCAGGTCAAACTTCATGCTAAAATAATAGAA CDS_1685 1583586 1583805 brie28-concat.gff p_0701 1587918 p_0701 TATGAAAAA 3 - 1.0 intergenic AAGAGATTTAAGTGATTTAATGTTTTTATTAGGTCATTTTTCATGAAAGAATAGTTATGAAAAAGAAATTA CDS_1691 1587815 1588269 brie28-concat.gff p_0700 1588042 p_0700 TGTAAAATA 4 - 1.0 intergenic ATAAAAATATAGATTGATTTCTCAAAAAAATACTTAACTTATCACCTGTGGGTAGTGTAAAATAAGTTGTG CDS_1691 1587815 1588269 brie28-concat.gff p_0699 1588154 p_0699 TTTAATCTA 2 - 0.99 intergenic TTATAAAGGATTATTGCTTAATCTATAGATAATTTAATTAATCTTCTAATTTAATCTAGTTTAGAATTGCT CDS_1691 1587815 1588269 brie28-concat.gff p_0703 1591042 p_0703 TGCTATAAT 5 - 1.0 intergenic CAAAACAGTCTTCTCAAAATAAGAGATTTTCAATCAAAACCAATGCACCCATCTATGCTATAATAAACCT CDS_1693 1591043 1591250 brie28-concat.gff p_0702 1591127 p_0702 TGTAAAATA 4 + 1.0 intergenic CATAGATGGGTGCATTGGTTTTGATTGAAAATCTCTTATTTTGAGAAGACTGTTTTGTAAAATAAACATTC CDS_1694 1591043 1591250 brie28-concat.gff p_0705 1594775 p_0705 AAGAACAAA 2 - 1.0 intergenic AAAATTGGTAGATATTTTACAGGTTAGGAATCCTTGAAAAATGATTTTTCTGGAGAAGAACAAAGTCTAAA CDS_1696 1594480 1594872 brie28-concat.gff p_0704 1594871 p_0704 TGCTAAAAT 3 + 1.0 intergenic AATCATTTTTCAAGGATTCCTAACCTGTAAAATATCTACCAATTTTCCTTTTTTGTGCTAAAATAGATTCC CDS_1697 1594480 1594872 brie28-concat.gff p_0708 1602221 p_0708 TGTTATAAT 5 - 1.0 intergenic AAAGAAAATGGCGGAAAAAGTTGGGAAATGTTCATTTTTGGGAAACAACTACTTGTGTTATAATAGAGAAG CDS_1704 1602197 1602460 brie28-concat.gff p_0706 1602328 p_0706 TACAATAAT 3 + 1.0 intergenic ATGAACATTTCCCAACTTTTTCCGCCATTTTCTTTATCTACCCCTTATCTTATGGTACAATAATAGTAATT CDS_1705 1602197 1602460 brie28-concat.gff p_0707 1602432 p_0707 TTTTTTATA 3 + 1.0 intergenic TAAAAGTGAATATCAAAACGTCAAGTAAATCAGAGAAAAGATTGACTTGACCGGTTTTTTTATAGAATGGT CDS_1705 1602197 1602460 brie28-concat.gff p_0709 1607058 p_0709 GGTAATAAG 2 - 1.0 intergenic CTCTTGAGCTCTTTTTTTATGTTTTTTAAAATAAAATCCTTGAATATAAGGTAATAAGCAATACAATGTTC CDS_1709 1606969 1607143 brie28-concat.gff p_0711 1607713 p_0711 TGTAAAATA 4 - 1.0 intergenic CAGAAATTATAGAGCCGTTCTTTTTTTTTGAATTGAATACTATTCAATTGTAAAATGTAAAATATTAACAT CDS_1710 1607646 1607890 brie28-concat.gff p_0710 1607754 p_0710 TGAATAGTA 2 + 1.0 intergenic TTTCACTGTATAATTAAAAAATAAAAAAGAATGTTAATATTTTACATTTTACAATTGAATAGTATTCAATT CDS_1711 1607646 1607890 brie28-concat.gff p_0712 1610104 p_0712 TGTTTTTTT 3 - 1.0 intergenic GAGGATTATATTTAAATCGAAATTAGCTTTTTTCTGAATTTTATTTAGGTGTTTTTTTATTGCTATTCTGA CDS_1712 1609974 1610227 brie28-concat.gff p_0713 1613200 p_0713 TTATATAAT 5 - 1.0 intergenic GTTAAGGTGCTTATGAAAGTAAGTGCCTTTTTCTATTGCATTTTCCTGAAAAAAATTATATAATGGATGTG CDS_1718 1613099 1613286 brie28-concat.gff p_0715 1615368 p_0715 ATATTTATA 3 - 0.99 intergenic TGCCTATCCGTTTTTTGACAATAATGTTATAATAAATAAGTAAACTAAAATATTTATAGGAGAATAAACCT CDS_1719 1615367 1615588 brie28-concat.gff p_0714 1615481 p_0714 TTGTATAAT 4 - 1.0 intergenic TTCATAAGCTGAGGCTTTGGAACTGTAACAGCTTGAGTTTTGGTTTTGGTTCAAATTGTATAATTTATATC CDS_1719 1615367 1615588 brie28-concat.gff p_0716 1616618 p_0716 TGGTATTAT 3 - 1.0 intergenic AATATTTAGGAATTTTCTTTTTGGCAAGAATTTGTTGACAATGTTCCTTAGAATATGGTATTATATCAGAT CDS_1721 1616490 1616707 brie28-concat.gff p_0718 1622017 p_0718 TGGTATAAT 5 - 0.98 intergenic GTCCAAAGGAATTGTGCTCCGTGCTTGTTTTGGGTCAGAAATGCTTCTAGTTTTGTGGTATAATAAGGCTA CDS_1727 1621996 1622253 brie28-concat.gff p_0720 1625495 p_0720 AATCATATA 3 - 0.92 intergenic TAATATTTGATAAGAAATTCTTATGTATGTATCAAATTCTTGCAATGGCCTTTAGAATCATATAGAATAGG CDS_1732 1625458 1625654 brie28-concat.gff p_0719 1625626 p_0719 GAGTATAAT 4 + 1.0 intergenic ATCAAATATTAGTCATTGCCTATCATGAACATCACTTGCCCATAGAATACCTTGAGAGTATAATAATAAAT CDS_1733 1625458 1625654 brie28-concat.gff p_0721 1634267 p_0721 AATTTGATA 2 - 0.98 intergenic GCTTTAAAGAGTTTGAATCGACAGTTTGAAAATAGAGAGCTGACAATTCTTATAAAATTTGATACACTAAT CDS_1738 1634199 1634452 brie28-concat.gff p_0723 1643893 p_0723 TGTTATAAT 5 - 1.0 intergenic TCTACCTTTAGGTGGTCGTTTTTTTGATAAAATTCCTCGAATGACCTTTAGATTGTGTTATAATAAAAAGG CDS_1746 1643796 1644137 brie28-concat.gff p_0722 1643980 p_0722 TGCAAAACA 2 - 0.9 intergenic ATAAAGATTGGCTTAAAGAAAAAGCAAAATCTAATGACGAAGCTCAAAAAGATCTTGCAAAACACGTTAAG CDS_1746 1643796 1644137 brie28-concat.gff p_0725 1646420 p_0725 AAGAATTTT 3 - 1.0 intergenic AAAAGTCTTAATGTAAATTTTTTCCTAAACTTAATAAGAATTTCTTGCATCTAAAAAGAATTTTTGTATAA CDS_1750 1646338 1646510 brie28-concat.gff p_0724 1646484 p_0724 AAAAAATTT 3 + 1.0 intergenic TTATCTATTATACAAAAATTCTTTTTAGATGCAAGAAATTCTTATTAAGTTTAGGAAAAAATTTACATTAA CDS_1751 1646338 1646510 brie28-concat.gff p_0726 1647510 p_0726 TAAGAAAAA 3 - 1.0 intergenic AACCTCGATAGGTAGGACTCTCTTTTTTACTTAAAGAAGTTGATAGCTGACAAGTTAAGAAAAAGATGATA CDS_1752 1647452 1647620 brie28-concat.gff p_0728 1649687 p_0728 TACAATTCA 2 - 0.93 intergenic AAGGATTAGAATCATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAAT CDS_1756 1649631 1649923 brie28-concat.gff p_0727 1649799 p_0727 TGCTAAAAC 3 - 0.86 intergenic GTAGGGCTTCTTGCTTAACCAATCTGGATTTAAAAGAGTTTTTCTAGAGAAATCGTGCTAAAACTAGAGCT CDS_1756 1649631 1649923 brie28-concat.gff p_0730 1650399 p_0730 ATGATTTTA 3 - 0.53 intergenic TCGAATAGATTATAATAGGATAGATTTAAAAAATATTCTTCTTAATTCAGAGTAGATGATTTTACAAGAAT CDS_1757 1650369 1650583 brie28-concat.gff p_0729 1650482 p_0729 TCGAAATAA 3 + 1.0 intergenic TCATCTACTCTGAATTAAGAAGAATATTTTTTAAATCTATCCTATTATAATCTATTCGAAATAAGATGACA CDS_1758 1650369 1650583 brie28-concat.gff p_0731 1653729 p_0731 TGCTATAAT 5 + 1.0 intergenic ATAAATAGCCAGCAATCTTCCTAACAGAGCGGACAAGACAAACTCGCTTTTCTTATGCTATAATGAGAAAG CDS_1766 1653548 1653778 brie28-concat.gff p_0732 1659820 p_0732 TATGATAAA 3 - 1.0 intergenic GATTTTTTTGATGGGAAAATTTCTTGGTTAGTTTGTTTGATTTTCTTAAAAGGTGTATGATAAAGAATAAG CDS_1773 1659808 1659908 brie28-concat.gff p_0734 1660836 p_0734 TGGTATAAT 5 - 0.99 intergenic GGATAATCCTATCTAGTCTTGTCTTAAGTTTCCTACTTGCAATCACTTCGATTTATGGTATAATATTTCTC CDS_1774 1660741 1661110 brie28-concat.gff p_0733 1660960 p_0733 TGTTACTAT 2 - 1.0 intergenic CTCAAGCTGTGGATTTATTATAAGGTGAAGAGAAATAAAAAAGTAGTGACATTTCTGTTACTATGGCATTG CDS_1774 1660741 1661110 brie28-concat.gff p_0736 1663362 p_0736 TTTTTATTG 2 - 0.89 intergenic GAAAGGATCCTCCCGAAAAAATTTGTAAAACTATTGAAAATAAACCACTTTTTTATTGCCTCTTACGAATA CDS_1778 1663344 1663549 brie28-concat.gff p_0735 1663471 p_0735 GTACTATTT 2 - 0.79 intergenic TAAACGAGTAGAGAAAATTTAAAGATCAATTGTTGTAATGAAAATATCTGATGGAGTACTATTTCTAGAAA CDS_1778 1663344 1663549 brie28-concat.gff p_0737 1664858 p_0737 AGTTATAAT 4 - 1.0 intergenic TTTTGTTTGCCATAAAGAAAGTTTATGGCTAACCATAAAAAAGAAAGATTATACAAGTTATAATATTTTTT CDS_1780 1664822 1664960 brie28-concat.gff p_0738 1668865 p_0738 TATTATAAT 5 - 1.0 intergenic AGATTCCTGAATTATACCTCTATTTTCATGGTGTCTTGTCAAAATAGTAGATTTGTATTATAATAAAAGTA CDS_1786 1668833 1669055 brie28-concat.gff p_0739 1670404 p_0739 ACAAAATAT 3 - 1.0 intergenic GTCATTGAAAAGCTAAAGAAAATTTCGCAAAAAATGTAAAAAAGAGTTTACAAAATATGTAAAGTAAACTA CDS_1789 1670323 1670572 brie28-concat.gff p_0740 1676904 p_0740 TTGTATAAT 4 - 1.0 intergenic TATTCTTGCTATATGTGAAACATAAGACCATAATTTTTATCTTTTCCAGAAAATTTTGTATAATAAGGATA CDS_1799 1676880 1677039 brie28-concat.gff p_0741 1684536 p_0741 TGGATTTTG 2 - 1.0 intergenic CAACGTTTTTTCGGTCAGATTTAGCTGCTATTTTTGTGCTTATTTTTAGGGTTTTTGGATTTTGTAATGAA CDS_1801 1684359 1684722 brie28-concat.gff p_0743 1687156 p_0743 TGCTATAAT 5 - 0.99 intergenic TATTCTGCACCATTATACCAAAAGAAAGCAACCCTATGCAAGCTTTGTCAAAGTTTGCTATAATAGGCCTT CDS_1802 1687145 1687247 brie28-concat.gff p_0742 1687223 p_0742 TGGTATAAT 5 + 1.0 intergenic CCTCAAGGCCTATTATAGCAAACTTTGACAAAGCTTGCATAGGGTTGCTTTCTTTTGGTATAATGGTGCAG CDS_1803 1687145 1687247 brie28-concat.gff p_0744 1691927 p_0744 TGAATTTTT 3 - 0.98 intergenic TTCTCTGAAACCCTTGCAAATTTAGTTAAAAATGTTAGTATAGTATACAAGGTTTTGAATTTTTAGATAAT CDS_1806 1691896 1692004 brie28-concat.gff p_0745 1693780 p_0745 TGGTAACAT 2 - 1.0 intergenic CATTTTTTGGAATTACAGAAATATTCCGAAAATTCATTGATATTACCTTCCAAAGTGGTAACATATGTTGT CDS_1808 1693751 1693921 brie28-concat.gff p_0746 1695977 p_0746 TGATAGAAT 2 - 1.0 intergenic GATGCTTTTATTTAAAAGGTATCTTCTTCTTATTTTTTACAAGTAATCTCGAATATGATAGAATAAACTGA CDS_1810 1695953 1696063 brie28-concat.gff p_0747 1699356 p_0747 TTTAAAAAA 3 - 1.0 intergenic AGAGTGCTTATCCAAATTAAAAATAAAGGGCTTTCCTGAATAAGATAGAAAACGCTTTAAAAAATTGTTAT CDS_1813 1699242 1699572 brie28-concat.gff p_0749 1702124 p_0749 CACTATAAT 4 - 1.0 intergenic AATGGACGGATTTCTTTATTTTTATCCATGTAAGGGTTTATATAATATGTATAAACACTATAATAGATTTG CDS_1818 1702078 1702217 brie28-concat.gff p_0750 1708771 p_0750 TAGTAAAAT 3 + 1.0 intergenic TGTTTAAACCTTGAATACACAATATAAGTGCACAATAAAAACTCATAAGATTTTCTAGTAAAATAGAATTG CDS_1828 1708535 1708799 brie28-concat.gff p_0752 1710791 p_0752 TAGAAAAAC 2 - 1.0 intergenic AAGAGACTGGTTTTTTTATATTAAAAAAAATCAAAACGCTTACAAATCTTAGAAAAACTAGTTTTTTGAGT CDS_1830 1710727 1711145 brie28-concat.gff p_0751 1711049 p_0751 TATTATATA 3 - 1.0 intergenic TTCGGAAAAGCTAAAAAAGTCAAAAAGCTTATTGACAATAGCATACAATAAATGGTATTATATAACAGTTG CDS_1830 1710727 1711145 brie28-concat.gff p_0754 1712501 p_0754 TGTATATTT 3 - 0.92 intergenic TCGTTCAATTCTATTTTACTAGAAAATCTTATGAGTTTTTATTGTGCACTTATATTGTATATTTAAACTAT CDS_1834 1712476 1712595 brie28-concat.gff p_0753 1712567 p_0753 TAGTAAAAT 3 + 1.0 intergenic TATTTATAGTTTAAATATACAATATAAGTGCACAATAAAAACTCATAAGATTTTCTAGTAAAATAGAATTG CDS_1835 1712476 1712595 brie28-concat.gff p_0755 1727778 p_0755 TCATAAAAA 3 - 1.0 intergenic GATTCATTGAGCATAAAAAACGCTCGTTAAAAACTTTTTTGAGCATAAAAAACGCTCATAAAAAACTTTTT CDS_1864 1727743 1727860 brie28-concat.gff p_0756 1728335 p_0756 GAAAAATTT 3 - 1.0 intergenic AATTCATCTAGAAAGGTGGATTCTTTATTTAGTTTAAAAATAAAATAAAACAAGGGAAAAATTTCAAAAAT CDS_1865 1728168 1728412 brie28-concat.gff p_0757 1729412 p_0757 TGCTAAAAT 3 - 1.0 intergenic GATAAGAGTTGTCTTCTTTTTTTGTGGACAAATTTTGACTCAGTTTTTTGTTTTGTGCTAAAATAAGCCT CDS_1866 1729413 1729496 brie28-concat.gff p_0758 1732271 p_0758 CGGTATAAT 4 - 1.0 intergenic CGTGTCAATTTTTCGATAGTATTAGAAGAGAAATCTTTCTATTTGATTAGTTTTTCGGTATAATATGGTTT CDS_1869 1732157 1732439 brie28-concat.gff p_0759 1733826 p_0759 TGATATAAT 5 - 1.0 intergenic CTGTCAGAATATTTTGATATAAAAGATTTCATCGTTGAACAATTAGTCTCTTTTCTGATATAATAAACTGT CDS_1870 1733731 1733985 brie28-concat.gff p_0761 1734530 p_0761 TGTTATAAT 5 - 1.0 intergenic AGGCTTTTTTTGCTTGTTTAAACATGAATTATTGCCTCGTAAGATATCTGCTTTATGTTATAATATCAGTC CDS_1871 1734503 1734790 brie28-concat.gff p_0760 1734709 p_0760 TTTTAAAAT 3 - 1.0 intergenic ATAAGATAAAATATGAAACAAAACTTGTTGCGAATTTGTTGCGAAACAAAAATTCTTTTAAAATATAAAGA CDS_1871 1734503 1734790 brie28-concat.gff p_0763 1737016 p_0763 TATTATAAA 3 - 0.35 intergenic TTAATCGGTTTAATCTATTTGGCTATATCTCTTGATATAGTTAAATAGATTTTTTTATTATAAATGGGAAG CDS_1873 1737007 1737300 brie28-concat.gff p_0762 1737208 p_0762 AAATAAAAA 3 - 1.0 intergenic TGAGAATATAATTTAATACTTTAGATACAATATAATTCAACCAATATGAAAATAAAAAAATAACAAAAATT CDS_1873 1737007 1737300 brie28-concat.gff p_0764 1738822 p_0764 TGTCTATAA 3 + 1.0 intergenic GGCAATTCCTATATATGAAAATATTAATACTTAATTATTGCAAAAATATATAATATGTCTATAAGATTTAG CDS_1877 1738702 1738836 brie28-concat.gff p_0765 1739072 p_0765 TGTTATAAT 5 + 0.93 intergenic AATATACTCCTAATATTCAAAAGGTTAACGCAGACTGCACTATGTTTGCGTTTTTTGTTATAATTGTATAA CDS_1878 1738925 1739086 brie28-concat.gff p_0766 1748552 p_0766 TTAGAAATT 2 + 0.82 intergenic CTTCAAAGTGATAAGAATGCGTTTTTTAAAGTTTTCAAAGTTCCTAAAATCTCATTTAGAAATTGTGTGGA CDS_1886 1748365 1748759 brie28-concat.gff p_0767 1748670 p_0767 AAAAAGGTA 1 + 0.51 intergenic GCTGCCGTCCAGACAATTTCTAGCCAAGCAAAAGCTGGCTATTCTAACAGCCAGCAAAAAGGTACACTTAG CDS_1886 1748365 1748759 brie28-concat.gff p_0768 1748744 p_0768 CTAAAAAAT 3 + 0.45 intergenic AACGTCCAAAGAACGACGGAACGAGCAAACGTTGATTTGACGGTGTTTCTGAGGCCTAAAAAATCTAAAAG CDS_1886 1748365 1748759 brie28-concat.gff p_0770 1752813 p_0770 TTATTATAA 3 - 0.86 intergenic TTTAGGTTTGACAAGAACTATTTATAATTTCTTTTTACAGAAAAATAGTATATTCTTATTATAAGAAGAAT CDS_1889 1752788 1752959 brie28-concat.gff p_0769 1752861 p_0769 TGTAAAAAG 3 + 1.0 intergenic TCTCTCCTTTTTTTCAACTATTTATTCTTCTTATAATAAGAATATACTATTTTTCTGTAAAAAGAAATTAT CDS_1890 1752788 1752959 brie28-concat.gff p_0771 1753239 p_0771 TGTTATAAT 5 + 0.99 intergenic ATGACATCAGTCATCTCTTTTAATGTTCATCGTCTTTCACTTTTAGGTATACTTATGTTATAATAAGGAAC CDS_1891 1753147 1753274 brie28-concat.gff p_0772 1754526 p_0772 TGATATACT 2 + 1.0 intergenic ACGGTTTTTTCTTAAATGTAAGAAATAAGAGAGAAATTGACTAAATGGTATTATCTGATATACTTTAAATA CDS_1894 1754373 1754565 brie28-concat.gff p_0773 1756315 p_0773 TGCTATAAT 5 + 1.0 intergenic TATATAGTGGTTGAGATAAAAATATACCACAATATATTGATTTTTTTTTGCCTAGTGCTATAATTAGTGCT CDS_1895 1756232 1756342 brie28-concat.gff p_0774 1763454 p_0774 TGCTATAAT 5 - 1.0 intergenic AAAGAAAGTCTATTAAAATTCGAGCCTGAAATGGGTGGGGTTTTGATGGGCTTTTTGCTATAATAGTTAAG CDS_1901 1763413 1763535 brie28-concat.gff p_0776 1765311 p_0776 TGTAAATTA 3 - 1.0 intergenic AGAGGTCTATTTCTTTCTTACGTTGAAAAAAACCTGCACCATTTCCCAAAAGCTATGTAAATTATGATAGA CDS_1903 1765245 1765556 brie28-concat.gff p_0775 1765446 p_0775 CAGTTTTTT 2 - 0.83 intergenic TTTAATAGCAAGAAAGAGTTTCGTGGAAGATAAAGAGACAAAACAAAGAATTCTACAGTTTTTTGGGAAAA CDS_1903 1765245 1765556 brie28-concat.gff p_0778 1766829 p_0778 TGTAAAGTA 2 - 1.0 intergenic TTAATAGTTATGTTCTTGATTTTAAATCAACTATAACAGAATAACATATCTTTATTGTAAAGTAAAGTTAC CDS_1905 1766689 1766919 brie28-concat.gff p_0777 1766857 p_0777 TACAATAAA 3 + 1.0 intergenic ATATAACTTTTAACTATATATATTGATAAAAAGTTTTTGTCAAGTAACTTTACTTTACAATAAAGATATGT CDS_1906 1766689 1766919 brie28-concat.gff p_0779 1769160 p_0779 TAGTAAATT 3 - 1.0 intergenic TAATCGATAAGCCTCTAAAATTCGAAAAATTTTAATTCTAGTCTCTGTTCTGGTATAGTAAATTTGTAACA CDS_1910 1768914 1769260 brie28-concat.gff p_0781 1774084 p_0781 ATTTTATAT 3 - 1.0 intergenic TTATATATAATTATTTTATATATTGAGTGTATGTCCTTTAGAAAGATATGTCTAAATTTTATATATAAAAT CDS_1919 1774028 1774191 brie28-concat.gff p_0780 1774101 p_0780 TTTTATATA 3 + 1.0 intergenic GTACTCCTTGACTTCATATTATCATAAAAAATAAGATAGCCCTATTATATAAAAATTTTATATATAAAATT CDS_1920 1774028 1774191 brie28-concat.gff p_0782 1775036 p_0782 TGTAAACTT 2 + 0.91 intergenic AGGACTATTGATGTTTGGGGGAGCACTTTTACTATTTTTGATTTCATTTGAAATCTGTAAACTTATTGTAA CDS_1923 1774945 1775059 brie28-concat.gff p_0784 1778377 p_0784 GCTTATAAT 4 - 1.0 intergenic TTTTATATAATGTGTCCAAAAAATAGTTTTTTAATATTGATTTATAAATTAATGAGCTTATAATTGATTAT CDS_1924 1778340 1778469 brie28-concat.gff p_0783 1778465 p_0783 TGTGTGAAA 2 + 0.98 intergenic CATTAATTTATAAATCAATATTAAAAAACTATTTTTTGGACACATTATATAAAACTGTGTGAAAGGAGAAA CDS_1925 1778340 1778469 brie28-concat.gff p_0786 1779471 p_0786 TTTGATATA 3 - 1.0 intergenic TGTTTTATCATATTTTAAATTGTATAAAACATGTGTGTTGTTTTAATGCTTTACTTTTGATATACTGTCAA CDS_1926 1779448 1779564 brie28-concat.gff p_0785 1779547 p_0785 ATGATAAAA 3 + 0.99 intergenic AGTATATCAAAAGTAAAGCATTAAAACAACACACATGTTTTATACAATTTAAAATATGATAAAACAAAGAC CDS_1927 1779448 1779564 brie28-concat.gff p_0788 1780605 p_0788 TAAAAATAT 3 - 0.31 intergenic GCTGTTTGGGCGAAGTCTTTCTGAACGAATCAGGTTTATCTAAAATGTTATTTCCTAAAAATATTTTTTAT CDS_1928 1780590 1780788 brie28-concat.gff p_0787 1780710 p_0787 AGGATAAAA 3 - 0.38 intergenic GCCTTTACTTGGGCTTTTTTTCGTGGTAAAATAGCGGAGTATGTGAAATAATAGCAGGATAAAATGAAGCT CDS_1928 1780590 1780788 brie28-concat.gff p_0789 1787054 p_0789 TGATAAAAT 4 - 1.0 intergenic TTTCAACTCTTTATTCTAATCAAATAGTGATTTGAATTGACAAAACGATTTGATTTGATAAAATAATTTTA CDS_1933 1787029 1787193 brie28-concat.gff p_0790 1791066 p_0790 AGAAAAAAT 3 - 1.0 intergenic TTTTGTCATTGAATTGTGAGAAAATAAAGTAGAAACTCATACAAATAAGAGAAAAAATGCCATATTTTTGG CDS_1936 1790899 1791140 brie28-concat.gff p_0791 1791705 p_0791 ACTATAAAT 3 - 0.72 intergenic TTAACCTATTGGTCATAAATAAAATAATTTAATAACTTTTACTAATATGGATTGGACTATAAATAGATAAA CDS_1937 1791694 1791998 brie28-concat.gff p_0792 1801708 p_0792 TGATATTAT 3 - 1.0 intergenic AAGGTTTTCTTATAATCCTATGCGAAACCTGTTGACAAATCTATTTAGCATGATATGATATTATCAATTAA CDS_1947 1801654 1801831 brie28-concat.gff p_0794 1803125 p_0794 TAGAATAAT 3 - 0.99 intergenic TTATGTTTCACGTGAAACTAGAAATATAACCTTGACAAGAATGGATAAAACAATGTAGAATAATAGTCATC CDS_1948 1802853 1803281 brie28-concat.gff p_0793 1803261 p_0793 TTGATAATA 3 + 0.99 intergenic ACATAACCTTCTAAACAATCAAAATAGTCATTACTTGACGGATACTAAAAAAGACTTGATAATAGGAATAT CDS_1949 1802853 1803281 brie28-concat.gff p_0795 1810391 p_0795 TGATATAAT 5 + 1.0 intergenic TACAATTTTTTCACTTATCCACAGACTGTTGATAACTGTTTTTTAAATCACTTTATGATATAATTAAGCTT CDS_1954 1810239 1810426 brie28-concat.gff p_0796 1815609 p_0796 TAAAAAAAA 3 + 1.0 intergenic AGGGGTGCGAGTTTTCGGCGACATTTTGGCGAGTTTTTTGGCGAGTTTTTAAAAAAAATACTAAAATTGTT CDS_1959 1815403 1815665 brie28-concat.gff p_0797 1816703 p_0797 CCCAATTTT 1 + 0.98 intergenic CCCAATTTTTCAAAAAATGCCCTTGCGATTCGAGGGCTTTTTTTGTAGTTCGCCACCTTTCCTTTGTGGCG CDS_1961 1816534 1816899