##gff-version 3 # Sequence Data: seqnum=1;seqlen=43864;seqhdr="80alpha copy (43,864 bp) Accession: NC_009526" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1 80alpha Prodigal_v2.6.3 CDS 32 1417 180.0 - 0 ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333;conf=99.99;score=179.33;cscore=172.04;sscore=7.29;rscore=7.43;uscore=-2.38;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 1525 1725 24.5 + 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264;conf=99.64;score=24.49;cscore=15.52;sscore=8.97;rscore=2.15;uscore=4.52;tscore=2.29; 80alpha Prodigal_v2.6.3 CDS 1662 2567 101.3 - 0 ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288;conf=100.00;score=102.22;cscore=97.35;sscore=4.87;rscore=7.43;uscore=-6.35;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 2603 2788 29.0 - 0 ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.312;conf=99.87;score=28.96;cscore=24.92;sscore=4.04;rscore=1.06;uscore=0.86;tscore=2.12; 80alpha Prodigal_v2.6.3 CDS 2948 3115 16.6 - 0 ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.256;conf=97.84;score=16.58;cscore=12.29;sscore=4.28;rscore=4.90;uscore=-2.53;tscore=1.91; 80alpha Prodigal_v2.6.3 CDS 3185 3901 93.8 - 0 ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.326;conf=100.00;score=93.12;cscore=88.91;sscore=4.21;rscore=1.45;uscore=0.52;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 4065 4307 10.9 + 0 ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305;conf=92.46;score=10.90;cscore=1.69;sscore=9.21;rscore=5.43;uscore=1.00;tscore=2.78; 80alpha Prodigal_v2.6.3 CDS 4323 5111 104.9 + 0 ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359;conf=100.00;score=105.98;cscore=91.93;sscore=14.05;rscore=7.43;uscore=2.61;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 5127 5321 13.8 + 0 ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282;conf=96.86;score=14.92;cscore=7.77;sscore=7.15;rscore=5.71;uscore=-1.89;tscore=2.22; 80alpha Prodigal_v2.6.3 CDS 5374 5550 8.5 + 0 ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311;conf=89.28;score=9.22;cscore=0.11;sscore=9.11;rscore=5.17;uscore=1.21;tscore=2.02; 80alpha Prodigal_v2.6.3 CDS 5525 5755 32.5 - 0 ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.281;conf=99.93;score=31.85;cscore=25.54;sscore=6.31;rscore=6.78;uscore=-2.46;tscore=2.64; 80alpha Prodigal_v2.6.3 CDS 5805 5942 12.9 + 0 ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333;conf=95.11;score=12.91;cscore=14.00;sscore=-1.09;rscore=-1.83;uscore=-0.82;tscore=1.56; 80alpha Prodigal_v2.6.3 CDS 6188 6448 37.7 + 0 ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330;conf=99.98;score=37.03;cscore=26.65;sscore=10.37;rscore=5.66;uscore=2.47;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 6458 6679 23.1 + 0 ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374;conf=99.62;score=24.26;cscore=14.11;sscore=10.15;rscore=6.51;uscore=-0.07;tscore=2.54; 80alpha Prodigal_v2.6.3 CDS 6672 7295 85.4 + 0 ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353;conf=100.00;score=86.60;cscore=75.49;sscore=11.12;rscore=7.43;uscore=-0.46;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 7295 7723 62.9 + 0 ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.364;conf=100.00;score=64.21;cscore=51.54;sscore=12.67;rscore=7.43;uscore=1.06;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 7737 8411 50.9 + 0 ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.388;conf=100.00;score=52.01;cscore=49.21;sscore=2.81;rscore=2.72;uscore=-3.94;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 8408 8524 2.9 + 0 ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.316;conf=72.53;score=4.22;cscore=-1.39;sscore=5.62;rscore=3.39;uscore=0.11;tscore=1.32; 80alpha Prodigal_v2.6.3 CDS 8517 9374 104.2 - 0 ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.300;conf=100.00;score=103.53;cscore=104.66;sscore=-1.13;rscore=-0.99;uscore=-2.39;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 9439 10209 85.5 + 0 ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337;conf=100.00;score=85.51;cscore=74.23;sscore=11.28;rscore=7.43;uscore=0.95;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 10219 10998 69.0 + 0 ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.356;conf=100.00;score=70.17;cscore=63.54;sscore=6.63;rscore=2.72;uscore=-0.16;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 10992 11150 7.0 + 0 ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377;conf=87.10;score=8.31;cscore=7.37;sscore=0.94;rscore=3.53;uscore=-5.66;tscore=1.81; 80alpha Prodigal_v2.6.3 CDS 11163 11384 21.5 + 0 ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374;conf=99.45;score=22.59;cscore=16.20;sscore=6.39;rscore=6.51;uscore=-3.80;tscore=2.54; 80alpha Prodigal_v2.6.3 CDS 11394 11801 52.3 + 0 ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360;conf=100.00;score=53.52;cscore=43.79;sscore=9.73;rscore=5.66;uscore=-0.00;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 11801 11986 23.7 + 0 ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.317;conf=99.77;score=26.40;cscore=18.86;sscore=7.55;rscore=4.14;uscore=-1.40;tscore=2.12; 80alpha Prodigal_v2.6.3 CDS 11987 12346 46.5 + 0 ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394;conf=100.00;score=47.77;cscore=35.30;sscore=12.47;rscore=5.66;uscore=2.64;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 12347 12595 19.8 + 0 ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.382;conf=99.22;score=21.07;cscore=10.42;sscore=10.65;rscore=5.74;uscore=0.79;tscore=2.85; 80alpha Prodigal_v2.6.3 CDS 12610 13011 45.5 + 0 ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341;conf=100.00;score=46.63;cscore=35.46;sscore=11.18;rscore=7.43;uscore=-0.27;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 13008 13355 46.5 + 0 ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287;conf=100.00;score=49.67;cscore=39.82;sscore=9.85;rscore=5.66;uscore=-1.91;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 13352 13660 32.6 + 0 ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333;conf=99.97;score=34.93;cscore=25.08;sscore=9.85;rscore=5.66;uscore=-1.08;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 13653 13889 45.7 + 0 ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.380;conf=100.00;score=46.98;cscore=34.61;sscore=12.38;rscore=5.30;uscore=3.12;tscore=2.71; 80alpha Prodigal_v2.6.3 CDS 13894 14406 78.1 + 0 ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366;conf=100.00;score=79.33;cscore=66.94;sscore=12.38;rscore=7.43;uscore=0.83;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 14443 14649 7.9 + 0 ID=1_33;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.372;conf=88.26;score=8.77;cscore=9.50;sscore=-0.72;rscore=4.63;uscore=-0.74;tscore=-5.50; 80alpha Prodigal_v2.6.3 CDS 14646 14849 24.9 + 0 ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324;conf=99.76;score=26.19;cscore=16.16;sscore=10.03;rscore=4.55;uscore=1.85;tscore=2.33; 80alpha Prodigal_v2.6.3 CDS 14842 15078 41.8 + 0 ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.266;conf=99.99;score=43.08;cscore=32.09;sscore=10.99;rscore=6.95;uscore=0.07;tscore=2.71; 80alpha Prodigal_v2.6.3 CDS 15068 15457 41.9 + 0 ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.313;conf=100.00;score=43.11;cscore=33.45;sscore=9.66;rscore=5.66;uscore=-0.11;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 15454 15627 11.1 + 0 ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397;conf=94.79;score=12.62;cscore=7.49;sscore=5.14;rscore=1.86;uscore=-0.20;tscore=1.98; 80alpha Prodigal_v2.6.3 CDS 15798 16220 45.2 + 0 ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329;conf=100.00;score=45.16;cscore=35.08;sscore=10.08;rscore=5.66;uscore=1.52;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 16338 16847 54.9 + 0 ID=1_39;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.339;conf=100.00;score=54.89;cscore=62.12;sscore=-7.23;rscore=5.83;uscore=-3.46;tscore=-9.61; 80alpha Prodigal_v2.6.3 CDS 16834 18111 133.4 + 0 ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334;conf=100.00;score=134.61;cscore=132.29;sscore=2.32;rscore=-0.99;uscore=-0.77;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 18122 19657 241.3 + 0 ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333;conf=99.99;score=242.48;cscore=230.48;sscore=12.00;rscore=7.43;uscore=0.50;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 19664 20659 143.7 + 0 ID=1_42;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348;conf=100.00;score=144.87;cscore=144.42;sscore=0.45;rscore=5.83;uscore=3.02;tscore=-9.61; 80alpha Prodigal_v2.6.3 CDS 20732 20902 19.0 + 0 ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.327;conf=98.74;score=18.98;cscore=11.56;sscore=7.42;rscore=3.80;uscore=1.67;tscore=1.95; 80alpha Prodigal_v2.6.3 CDS 21011 21631 124.0 + 0 ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.364;conf=100.00;score=123.99;cscore=115.40;sscore=8.59;rscore=5.66;uscore=0.04;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 21645 22619 161.2 + 0 ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347;conf=100.00;score=162.31;cscore=147.48;sscore=14.83;rscore=5.66;uscore=5.14;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 22641 22928 53.0 + 0 ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337;conf=100.00;score=54.03;cscore=41.28;sscore=12.75;rscore=7.43;uscore=1.38;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 22937 23269 40.6 + 0 ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351;conf=99.99;score=41.80;cscore=35.59;sscore=6.21;rscore=2.72;uscore=-0.59;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 23266 23568 1.7 + 0 ID=1_48;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.337;conf=70.87;score=3.87;cscore=9.91;sscore=-6.04;rscore=-0.85;uscore=2.27;tscore=-9.61; 80alpha Prodigal_v2.6.3 CDS 23568 23915 44.9 + 0 ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342;conf=100.00;score=47.24;cscore=37.40;sscore=9.84;rscore=5.66;uscore=-1.09;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 23927 24310 48.0 + 0 ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333;conf=100.00;score=49.16;cscore=40.59;sscore=8.58;rscore=7.43;uscore=-2.90;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 24329 24910 109.3 + 0 ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.368;conf=100.00;score=110.41;cscore=97.55;sscore=12.86;rscore=5.66;uscore=3.23;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 24972 25337 63.6 + 0 ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363;conf=100.00;score=63.61;cscore=52.83;sscore=10.78;rscore=5.66;uscore=2.23;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 25367 25711 48.9 + 0 ID=1_53;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322;conf=100.00;score=49.86;cscore=48.58;sscore=1.28;rscore=-0.99;uscore=-1.59;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 25728 29192 465.4 + 0 ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.346;conf=99.99;score=466.46;cscore=461.21;sscore=5.25;rscore=5.66;uscore=2.98;tscore=-4.48; 80alpha Prodigal_v2.6.3 CDS 29205 30152 122.2 + 0 ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311;conf=100.00;score=123.35;cscore=111.34;sscore=12.01;rscore=7.43;uscore=0.54;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 30161 32062 259.7 + 0 ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358;conf=99.99;score=260.92;cscore=253.81;sscore=7.11;rscore=2.72;uscore=0.31;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 32077 33987 241.2 + 0 ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.357;conf=99.99;score=242.35;cscore=232.61;sscore=9.73;rscore=7.43;uscore=-1.71;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 33987 35810 265.4 + 0 ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.366;conf=99.99;score=267.99;cscore=261.10;sscore=6.90;rscore=2.72;uscore=-1.34;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 35810 36187 49.7 + 0 ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.360;conf=100.00;score=51.93;cscore=45.14;sscore=6.79;rscore=-0.99;uscore=2.61;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 36203 36370 7.8 + 0 ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333;conf=85.72;score=7.79;cscore=6.02;sscore=1.77;rscore=3.74;uscore=-3.87;tscore=1.91; 80alpha Prodigal_v2.6.3 CDS 36411 36710 30.1 + 0 ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320;conf=99.92;score=30.92;cscore=24.65;sscore=6.28;rscore=2.72;uscore=-0.18;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 36847 38745 255.6 + 0 ID=1_62;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360;conf=99.99;score=255.59;cscore=249.97;sscore=5.61;rscore=5.66;uscore=-2.94;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 38758 39930 188.7 + 0 ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341;conf=99.99;score=189.82;cscore=176.97;sscore=12.84;rscore=5.66;uscore=3.15;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 39936 40331 50.2 + 0 ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.323;conf=100.00;score=51.44;cscore=42.97;sscore=8.47;rscore=2.72;uscore=1.63;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 40387 40689 45.6 + 0 ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314;conf=100.00;score=46.28;cscore=34.97;sscore=11.31;rscore=7.43;uscore=0.31;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 40701 42155 221.1 + 0 ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346;conf=99.99;score=222.28;cscore=215.31;sscore=6.97;rscore=2.72;uscore=0.20;tscore=2.90; 80alpha Prodigal_v2.6.3 CDS 42770 43606 89.5 + 0 ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.260;conf=100.00;score=88.87;cscore=80.05;sscore=8.82;rscore=5.66;uscore=0.91;tscore=2.90;