##gff-version 3 # Sequence Data: seqnum=1;seqlen=44970;seqhdr="phi12 copy (44,970 bp) Accession: AF424782" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="39|Rickettsia_conorii_Malish_7|B|32.4|11|1";gc_cont=32.40;transl_table=11;uses_sd=1 phi12 Prodigal_v2.6.3 CDS 84 1289 118.1 - 0 ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.294;conf=100.00;score=117.48;cscore=111.39;sscore=6.09;rscore=7.43;uscore=-3.58;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 1415 2029 68.3 + 0 ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.263;conf=100.00;score=68.33;cscore=58.56;sscore=9.77;rscore=2.72;uscore=4.16;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 2026 2151 4.5 - 0 ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341;conf=76.52;score=5.14;cscore=5.34;sscore=-0.21;rscore=1.34;uscore=-3.62;tscore=1.43; phi12 Prodigal_v2.6.3 CDS 2209 2391 18.6 - 0 ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262;conf=98.41;score=17.94;cscore=15.99;sscore=1.96;rscore=4.20;uscore=-3.68;tscore=2.09; phi12 Prodigal_v2.6.3 CDS 2595 2936 38.0 - 0 ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.257;conf=99.99;score=39.19;cscore=27.95;sscore=11.23;rscore=5.83;uscore=1.28;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 2942 3874 129.9 - 0 ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.265;conf=100.00;score=131.05;cscore=116.77;sscore=14.28;rscore=7.43;uscore=2.84;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 3890 4603 89.8 - 0 ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336;conf=100.00;score=89.19;cscore=75.04;sscore=14.14;rscore=7.43;uscore=4.47;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 4736 4999 30.1 + 0 ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.254;conf=99.90;score=30.12;cscore=26.31;sscore=3.81;rscore=2.72;uscore=-1.80;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 5015 5260 26.3 + 0 ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354;conf=99.82;score=27.37;cscore=12.06;sscore=15.31;rscore=7.22;uscore=4.16;tscore=2.82; phi12 Prodigal_v2.6.3 CDS 5229 5594 31.0 - 0 ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290;conf=99.91;score=30.34;cscore=23.04;sscore=7.29;rscore=7.43;uscore=-2.38;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 5649 5864 21.6 + 0 ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338;conf=99.31;score=21.64;cscore=11.76;sscore=9.88;rscore=6.33;uscore=1.08;tscore=2.47; phi12 Prodigal_v2.6.3 CDS 5889 6152 18.9 + 0 ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307;conf=98.98;score=19.92;cscore=7.84;sscore=12.08;rscore=7.43;uscore=0.74;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 6405 6728 57.2 + 0 ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.312;conf=100.00;score=56.53;cscore=43.80;sscore=12.74;rscore=7.43;uscore=3.06;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 6743 7105 70.6 + 0 ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.306;conf=100.00;score=71.70;cscore=59.28;sscore=12.43;rscore=7.43;uscore=0.98;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 7102 8268 171.8 + 0 ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362;conf=100.00;score=173.08;cscore=166.17;sscore=6.91;rscore=2.72;uscore=-0.02;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 8294 8851 98.1 + 0 ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344;conf=100.00;score=99.11;cscore=90.75;sscore=8.36;rscore=1.45;uscore=3.01;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 8920 10872 308.9 + 0 ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351;conf=99.99;score=308.93;cscore=307.14;sscore=1.79;rscore=-0.99;uscore=-0.12;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 10885 11070 17.8 + 0 ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.285;conf=98.72;score=18.90;cscore=16.23;sscore=2.67;rscore=5.44;uscore=-6.03;tscore=2.12; phi12 Prodigal_v2.6.3 CDS 11070 11471 34.4 + 0 ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341;conf=99.97;score=35.95;cscore=26.11;sscore=9.84;rscore=5.66;uscore=-0.25;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 11471 11728 25.6 + 0 ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407;conf=99.79;score=26.88;cscore=14.73;sscore=12.15;rscore=5.66;uscore=2.31;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 11731 11931 16.1 + 0 ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363;conf=98.20;score=17.40;cscore=14.99;sscore=2.40;rscore=4.48;uscore=-5.62;tscore=2.29; phi12 Prodigal_v2.6.3 CDS 11946 12188 18.5 + 0 ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370;conf=98.90;score=19.57;cscore=12.27;sscore=7.30;rscore=7.13;uscore=-3.73;tscore=2.78; phi12 Prodigal_v2.6.3 CDS 12202 12408 20.3 + 0 ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314;conf=99.28;score=21.45;cscore=14.73;sscore=6.71;rscore=2.22;uscore=1.00;tscore=2.36; phi12 Prodigal_v2.6.3 CDS 12411 12812 50.6 + 0 ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331;conf=100.00;score=51.90;cscore=40.05;sscore=11.85;rscore=7.43;uscore=0.27;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 12809 13156 46.5 + 0 ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287;conf=100.00;score=49.67;cscore=39.82;sscore=9.85;rscore=5.66;uscore=-1.91;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 13153 13461 33.0 + 0 ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.330;conf=99.97;score=35.42;cscore=25.57;sscore=9.85;rscore=5.66;uscore=-1.08;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 13454 13690 46.3 + 0 ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384;conf=100.00;score=47.51;cscore=35.14;sscore=12.38;rscore=5.30;uscore=3.12;tscore=2.71; phi12 Prodigal_v2.6.3 CDS 13695 14237 79.8 + 0 ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378;conf=100.00;score=81.00;cscore=68.62;sscore=12.38;rscore=7.43;uscore=0.83;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 14274 14462 14.9 + 0 ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.407;conf=97.40;score=15.77;cscore=17.86;sscore=-2.09;rscore=4.22;uscore=-1.17;tscore=-6.03; phi12 Prodigal_v2.6.3 CDS 14437 14637 35.3 + 0 ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.313;conf=99.97;score=35.33;cscore=29.95;sscore=5.37;rscore=5.88;uscore=-2.81;tscore=2.29; phi12 Prodigal_v2.6.3 CDS 14625 14792 12.9 + 0 ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.363;conf=96.22;score=14.08;cscore=11.71;sscore=2.37;rscore=-1.50;uscore=0.75;tscore=1.91; phi12 Prodigal_v2.6.3 CDS 14860 15060 11.6 + 0 ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.269;conf=93.44;score=11.55;cscore=6.39;sscore=5.16;rscore=4.48;uscore=-1.61;tscore=2.29; phi12 Prodigal_v2.6.3 CDS 15112 17043 308.2 + 0 ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356;conf=99.99;score=308.97;cscore=298.00;sscore=10.97;rscore=7.43;uscore=-0.08;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 17172 17345 3.7 + 0 ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=3-4bp;gc_cont=0.345;conf=69.85;score=3.65;cscore=8.49;sscore=-4.84;rscore=-1.24;uscore=-5.58;tscore=1.98; phi12 Prodigal_v2.6.3 CDS 17305 17568 21.5 + 0 ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307;conf=99.29;score=21.48;cscore=23.91;sscore=-2.43;rscore=-0.99;uscore=-4.34;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 17909 18199 43.5 + 0 ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.309;conf=99.99;score=42.85;cscore=35.48;sscore=7.37;rscore=2.72;uscore=2.41;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 18180 19547 185.5 + 0 ID=1_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.327;conf=99.99;score=185.54;cscore=191.54;sscore=-6.00;rscore=-0.99;uscore=-0.53;tscore=-4.48; phi12 Prodigal_v2.6.3 CDS 19560 19997 46.4 + 0 ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.347;conf=100.00;score=47.53;cscore=39.06;sscore=8.46;rscore=5.66;uscore=-1.23;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 20154 20468 29.0 + 0 ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279;conf=99.87;score=29.04;cscore=24.75;sscore=4.29;rscore=5.66;uscore=-4.27;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 20590 20895 33.9 + 0 ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294;conf=99.96;score=33.87;cscore=27.53;sscore=6.34;rscore=2.72;uscore=0.72;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 20885 22576 213.7 + 0 ID=1_41;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333;conf=99.99;score=214.94;cscore=216.84;sscore=-1.90;rscore=2.72;uscore=-1.35;tscore=-4.48; phi12 Prodigal_v2.6.3 CDS 22581 23819 133.5 + 0 ID=1_42;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323;conf=100.00;score=134.75;cscore=138.06;sscore=-3.31;rscore=-0.99;uscore=0.93;tscore=-4.48; phi12 Prodigal_v2.6.3 CDS 23803 24576 136.7 + 0 ID=1_43;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.311;conf=100.00;score=137.89;cscore=131.50;sscore=6.39;rscore=0.00;uscore=2.34;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 24543 25751 216.5 + 0 ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.325;conf=99.99;score=216.54;cscore=212.25;sscore=4.29;rscore=-0.99;uscore=2.38;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 25820 26098 21.9 + 0 ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.312;conf=99.35;score=21.85;cscore=17.61;sscore=4.24;rscore=2.72;uscore=-1.37;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 26110 26442 30.9 + 0 ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.273;conf=99.94;score=32.07;cscore=23.96;sscore=8.11;rscore=2.72;uscore=1.34;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 26439 26840 60.6 + 0 ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336;conf=100.00;score=62.94;cscore=58.75;sscore=4.19;rscore=-0.99;uscore=-0.04;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 26841 27236 34.5 + 0 ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.285;conf=99.97;score=35.74;cscore=26.91;sscore=8.84;rscore=1.45;uscore=3.22;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 27271 27912 127.6 + 0 ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.364;conf=100.00;score=128.53;cscore=117.54;sscore=10.99;rscore=7.43;uscore=-0.24;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 28004 28459 84.0 + 0 ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368;conf=100.00;score=84.02;cscore=71.79;sscore=12.23;rscore=7.43;uscore=1.91;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 28517 28867 72.2 + 0 ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311;conf=100.00;score=72.84;cscore=61.63;sscore=11.21;rscore=7.43;uscore=0.23;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 28909 29067 20.0 + 0 ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333;conf=99.17;score=20.79;cscore=18.99;sscore=1.80;rscore=-1.58;uscore=0.75;tscore=1.81; phi12 Prodigal_v2.6.3 CDS 29081 35281 1012.2 + 0 ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.363;conf=99.99;score=1013.36;cscore=1001.82;sscore=11.55;rscore=7.43;uscore=0.09;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 35281 36105 110.0 + 0 ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.307;conf=100.00;score=111.25;cscore=104.16;sscore=7.10;rscore=1.45;uscore=1.47;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 36114 37697 204.2 + 0 ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304;conf=99.99;score=205.35;cscore=196.75;sscore=8.60;rscore=2.72;uscore=1.80;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 37697 37987 37.1 + 0 ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.344;conf=99.99;score=39.67;cscore=34.05;sscore=5.63;rscore=1.45;uscore=-1.32;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 38003 39913 272.0 + 0 ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.356;conf=99.99;score=273.14;cscore=262.75;sscore=10.39;rscore=5.83;uscore=0.55;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 39880 41379 214.9 + 0 ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333;conf=99.99;score=214.94;cscore=211.50;sscore=3.44;rscore=-0.99;uscore=1.53;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 41379 41768 66.6 + 0 ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.315;conf=100.00;score=67.92;cscore=53.34;sscore=14.58;rscore=7.43;uscore=2.97;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 41761 41925 27.2 + 0 ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.285;conf=99.86;score=28.46;cscore=19.82;sscore=8.64;rscore=4.81;uscore=0.69;tscore=1.88; phi12 Prodigal_v2.6.3 CDS 41971 42270 33.2 + 0 ID=1_61;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.310;conf=99.96;score=33.99;cscore=27.80;sscore=6.18;rscore=0.84;uscore=1.67;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 42406 42708 38.6 + 0 ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327;conf=99.99;score=38.64;cscore=29.71;sscore=8.93;rscore=7.43;uscore=-1.40;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 42719 44173 214.0 + 0 ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346;conf=99.99;score=215.15;cscore=209.17;sscore=5.98;rscore=2.72;uscore=-0.80;tscore=2.90; phi12 Prodigal_v2.6.3 CDS 44789 44968 18.1 + 0 ID=1_64;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322;conf=98.20;score=17.40;cscore=10.20;sscore=7.21;rscore=5.66;uscore=-0.70;tscore=2.90;