##gff-version  3
# Sequence Data: seqnum=1;seqlen=45849;seqhdr="NC_006842.1 Aliivibrio fischeri ES114 plasmid pES100, complete sequence"
# Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="11|Candidatus_Amoebophilus_asiaticus_5a2|B|35.0|11|0";gc_cont=35.00;transl_table=11;uses_sd=0
NC_006842.1	Prodigal_v2.6.3	CDS	14	310	22.4	-	0	ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.286;conf=99.33;score=21.74;cscore=17.00;sscore=4.74;rscore=0.55;uscore=1.37;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	655	1671	112.0	-	0	ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366;conf=100.00;score=111.39;cscore=117.33;sscore=-5.94;rscore=-4.87;uscore=-3.89;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	2035	2271	1.1	-	0	ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.304;conf=63.28;score=2.37;cscore=2.63;sscore=-0.27;rscore=-5.20;uscore=0.44;tscore=3.25;
NC_006842.1	Prodigal_v2.6.3	CDS	2274	2759	48.2	-	0	ID=1_4;partial=00;start_type=TTG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.368;conf=100.00;score=49.32;cscore=55.49;sscore=-6.17;rscore=4.37;uscore=-2.07;tscore=-9.63;
NC_006842.1	Prodigal_v2.6.3	CDS	2743	3072	43.3	-	0	ID=1_5;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=14bp;gc_cont=0.364;conf=100.00;score=44.57;cscore=34.59;sscore=9.98;rscore=0.85;uscore=4.42;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	3075	3266	2.8	-	0	ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375;conf=70.28;score=3.74;cscore=4.23;sscore=-0.49;rscore=-6.44;uscore=2.34;tscore=2.62;
NC_006842.1	Prodigal_v2.6.3	CDS	3293	3694	28.3	-	0	ID=1_7;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=5bp;gc_cont=0.383;conf=99.85;score=28.32;cscore=28.49;sscore=-0.17;rscore=1.89;uscore=-5.53;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	3771	4268	51.0	-	0	ID=1_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.404;conf=100.00;score=51.76;cscore=41.93;sscore=9.83;rscore=6.07;uscore=-0.48;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	4315	4560	13.5	-	0	ID=1_9;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.362;conf=96.65;score=14.63;cscore=9.72;sscore=4.91;rscore=2.49;uscore=-2.07;tscore=3.37;
NC_006842.1	Prodigal_v2.6.3	CDS	4574	4921	12.5	-	0	ID=1_10;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=5bp;gc_cont=0.391;conf=93.88;score=11.88;cscore=8.95;sscore=2.92;rscore=0.72;uscore=-0.61;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	5759	6046	23.0	-	0	ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.330;conf=99.59;score=23.87;cscore=22.70;sscore=1.17;rscore=-4.87;uscore=1.71;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	6085	6282	25.7	-	0	ID=1_12;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.348;conf=99.79;score=26.82;cscore=17.64;sscore=9.18;rscore=4.74;uscore=0.60;tscore=2.70;
NC_006842.1	Prodigal_v2.6.3	CDS	6295	7347	109.4	-	0	ID=1_13;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.373;conf=100.00;score=109.45;cscore=105.46;sscore=3.98;rscore=0.55;uscore=-0.03;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	7518	7796	50.6	-	0	ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.312;conf=100.00;score=51.91;cscore=42.77;sscore=9.14;rscore=1.85;uscore=2.54;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	7796	8371	82.4	-	0	ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344;conf=100.00;score=81.70;cscore=84.59;sscore=-2.88;rscore=-4.87;uscore=-0.83;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	8774	9421	70.0	+	0	ID=1_16;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=8bp;gc_cont=0.394;conf=100.00;score=70.04;cscore=60.90;sscore=9.14;rscore=5.00;uscore=0.67;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	9483	9713	30.3	-	0	ID=1_17;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.372;conf=99.89;score=29.69;cscore=25.02;sscore=4.67;rscore=0.50;uscore=1.66;tscore=3.16;
NC_006842.1	Prodigal_v2.6.3	CDS	10505	11365	85.1	-	0	ID=1_18;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.405;conf=100.00;score=84.41;cscore=75.47;sscore=8.93;rscore=6.07;uscore=0.05;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	11739	12350	81.3	-	0	ID=1_19;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=4bp;gc_cont=0.301;conf=100.00;score=80.65;cscore=73.23;sscore=7.42;rscore=3.42;uscore=1.18;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	12500	12679	14.3	+	0	ID=1_20;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.372;conf=96.41;score=14.32;cscore=15.04;sscore=-0.72;rscore=0.39;uscore=-3.56;tscore=2.45;
NC_006842.1	Prodigal_v2.6.3	CDS	12950	13159	28.7	+	0	ID=1_21;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.410;conf=99.84;score=28.02;cscore=22.16;sscore=5.86;rscore=5.03;uscore=-1.39;tscore=2.87;
NC_006842.1	Prodigal_v2.6.3	CDS	13437	13937	43.2	+	0	ID=1_22;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.373;conf=99.99;score=42.51;cscore=33.26;sscore=9.25;rscore=6.07;uscore=0.36;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	13947	14213	25.2	+	0	ID=1_23;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=8bp;gc_cont=0.348;conf=99.77;score=26.36;cscore=19.67;sscore=6.69;rscore=1.89;uscore=0.16;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	14249	14602	41.5	+	0	ID=1_24;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=11bp;gc_cont=0.412;conf=99.99;score=42.42;cscore=33.19;sscore=9.22;rscore=4.37;uscore=0.49;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	14602	15333	66.3	+	0	ID=1_25;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.417;conf=100.00;score=68.62;cscore=62.02;sscore=6.60;rscore=1.85;uscore=-1.08;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	15333	16772	130.3	+	0	ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395;conf=100.00;score=138.43;cscore=133.68;sscore=4.75;rscore=-4.87;uscore=-1.93;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	16781	17905	81.8	+	0	ID=1_27;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=8bp;gc_cont=0.395;conf=100.00;score=82.98;cscore=80.68;sscore=2.30;rscore=0.55;uscore=-2.90;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	17895	18533	53.8	+	0	ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.401;conf=100.00;score=54.97;cscore=54.63;sscore=0.34;rscore=-4.87;uscore=0.52;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	18517	20070	170.7	+	0	ID=1_29;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=11bp;gc_cont=0.399;conf=100.00;score=171.85;cscore=167.50;sscore=4.34;rscore=4.37;uscore=-4.65;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	20067	21086	76.4	+	0	ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402;conf=100.00;score=85.78;cscore=81.02;sscore=4.76;rscore=-4.87;uscore=-3.25;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	21087	21581	43.8	+	0	ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404;conf=100.00;score=45.09;cscore=46.70;sscore=-1.62;rscore=-4.87;uscore=-1.49;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	21692	22063	28.0	+	0	ID=1_32;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.392;conf=99.84;score=27.96;cscore=24.52;sscore=3.44;rscore=-0.44;uscore=0.41;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	22074	23030	88.5	+	0	ID=1_33;partial=00;start_type=TTG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.387;conf=100.00;score=89.66;cscore=93.29;sscore=-3.63;rscore=5.00;uscore=-0.17;tscore=-9.63;
NC_006842.1	Prodigal_v2.6.3	CDS	23044	23466	37.2	+	0	ID=1_34;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=13bp;gc_cont=0.444;conf=99.99;score=38.33;cscore=25.91;sscore=12.41;rscore=6.54;uscore=1.28;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	23639	24670	99.4	+	0	ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417;conf=100.00;score=99.35;cscore=99.44;sscore=-0.08;rscore=-4.87;uscore=1.32;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	24930	25562	18.6	+	0	ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348;conf=98.40;score=17.92;cscore=17.77;sscore=0.15;rscore=-4.87;uscore=2.21;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	25673	25981	24.0	+	0	ID=1_37;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.385;conf=99.60;score=23.97;cscore=20.22;sscore=3.74;rscore=-0.44;uscore=0.72;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	25993	26295	-0.1	+	0	ID=1_38;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.396;conf=56.19;score=1.08;cscore=-6.78;sscore=7.86;rscore=6.07;uscore=-2.33;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	26299	28752	237.3	+	0	ID=1_39;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.405;conf=99.99;score=238.53;cscore=233.50;sscore=5.03;rscore=2.56;uscore=-2.23;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	28833	29516	60.6	+	0	ID=1_40;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.411;conf=100.00;score=60.61;cscore=65.87;sscore=-5.26;rscore=-4.87;uscore=-3.86;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	29523	30431	69.3	+	0	ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394;conf=100.00;score=70.51;cscore=70.21;sscore=0.30;rscore=-4.87;uscore=0.50;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	30428	31618	71.6	+	0	ID=1_42;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.421;conf=100.00;score=73.65;cscore=68.04;sscore=5.61;rscore=0.85;uscore=-0.73;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	31615	32628	92.3	+	0	ID=1_43;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=6bp;gc_cont=0.399;conf=100.00;score=95.99;cscore=89.34;sscore=6.65;rscore=1.89;uscore=-2.39;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	32621	34531	161.4	+	0	ID=1_44;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=5bp;gc_cont=0.376;conf=100.00;score=162.65;cscore=160.30;sscore=2.35;rscore=0.55;uscore=-2.92;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	34547	34897	41.2	+	0	ID=1_45;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.370;conf=99.99;score=42.34;cscore=36.10;sscore=6.24;rscore=1.89;uscore=-0.22;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	34953	36947	210.9	+	0	ID=1_46;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=4bp;gc_cont=0.414;conf=99.99;score=211.53;cscore=209.92;sscore=1.62;rscore=-1.81;uscore=-0.72;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	36993	37541	33.8	+	0	ID=1_47;partial=00;start_type=ATG;rbs_motif=TACAA;rbs_spacer=15bp;gc_cont=0.415;conf=99.96;score=34.59;cscore=33.71;sscore=0.88;rscore=-1.75;uscore=-1.62;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	37574	38041	20.9	+	0	ID=1_48;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.412;conf=99.34;score=21.81;cscore=13.66;sscore=8.15;rscore=6.07;uscore=-2.31;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	38086	38427	20.8	+	0	ID=1_49;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=9bp;gc_cont=0.357;conf=99.30;score=21.57;cscore=15.17;sscore=6.39;rscore=1.89;uscore=0.25;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	38417	41752	425.4	+	0	ID=1_50;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=3bp;gc_cont=0.370;conf=99.99;score=426.67;cscore=418.78;sscore=7.89;rscore=3.42;uscore=-0.22;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	41985	42500	51.1	+	0	ID=1_51;partial=00;start_type=ATG;rbs_motif=AAAAAA;rbs_spacer=11bp;gc_cont=0.353;conf=100.00;score=50.40;cscore=36.93;sscore=13.47;rscore=8.22;uscore=2.43;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	42512	43210	107.7	+	0	ID=1_52;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.320;conf=100.00;score=108.83;cscore=100.10;sscore=8.73;rscore=1.85;uscore=2.26;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	43214	43774	50.4	+	0	ID=1_53;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.412;conf=100.00;score=51.60;cscore=45.21;sscore=6.39;rscore=1.85;uscore=-0.17;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	44060	44800	88.6	+	0	ID=1_54;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.414;conf=100.00;score=88.00;cscore=85.51;sscore=2.48;rscore=0.55;uscore=-0.88;tscore=3.47;
NC_006842.1	Prodigal_v2.6.3	CDS	44752	45837	93.8	+	0	ID=1_55;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.387;conf=100.00;score=93.85;cscore=89.41;sscore=4.44;rscore=0.55;uscore=0.42;tscore=3.47;